4G77 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF C-LOBE OF BOVINE LACTOFERRIN COMPLEXED WITH TOLFENAMIC ACID AT 1.98 A RESOLUTION

Authors :   P. K. Shukla, L. Gautam, M. Sinha, P. Kaur, S. Sharma, T. P. Singh

Date :   20 Jul 12 (Deposition) - 29 Aug 12 (Release) - 29 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.98

Chains :   Asym./Biol. Unit : A

Keywords :   Metal Binding Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. K. Shukla, L. Gautam, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of C-Lobe Of Bovine Lactoferrin Complexed With Tolfenamic Acid At 1. 98 A Resolution
To Be Published
PubMed: search

Molecule 1 - LACTOTRANSFERRIN
	Chains	:	A
	EC Number	:	3.4.21.-
	Fragment	:	C-LOBE, UNP RESIDUES 361-705
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	LACTOFERRIN, LACTOFERRICIN-B, LFCIN-B

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (6, 11)

No.	Name	Count	Type	Full Name
1	CO3	1	Ligand/Ion	CARBONATE ION
2	FE	1	Ligand/Ion	FE (III) ION
3	NAG	5	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	1	Ligand/Ion	SULFATE ION
5	TLF	1	Ligand/Ion	2-[(3-CHLORO-2-METHYLPHENYL)AMINO]BENZOIC ACID
6	ZN	2	Ligand/Ion	ZINC ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:395 , TYR A:433 , TYR A:526 , HIS A:595 , CO3 A:702	BINDING SITE FOR RESIDUE FE A 701
02	AC2	SOFTWARE	ASP A:395 , TYR A:433 , THR A:459 , ARG A:463 , THR A:464 , ALA A:465 , GLY A:466 , TYR A:526 , HIS A:595 , FE A:701	BINDING SITE FOR RESIDUE CO3 A 702
03	AC3	SOFTWARE	ARG A:570 , ARG A:578 , HOH A:931 , HOH A:938	BINDING SITE FOR RESIDUE SO4 A 703
04	AC4	SOFTWARE	GLU A:659	BINDING SITE FOR RESIDUE ZN A 704
05	AC5	SOFTWARE	HIS A:588 , TLF A:711	BINDING SITE FOR RESIDUE ZN A 705
06	AC6	SOFTWARE	SER A:365 , ASN A:368 , GLN A:614 , LEU A:617 , HOH A:1065	BINDING SITE FOR RESIDUE NAG A 706
07	AC7	SOFTWARE	LEU A:473 , ASN A:476 , ALA A:668 , ASN A:671 , NAG A:708 , TLF A:711 , HOH A:884 , HOH A:1079	BINDING SITE FOR RESIDUE NAG A 707
08	AC8	SOFTWARE	GLU A:664 , THR A:667 , ASN A:671 , NAG A:707 , HOH A:884 , HOH A:1091	BINDING SITE FOR RESIDUE NAG A 708
09	AC9	SOFTWARE	LEU A:434 , ASN A:545 , ASP A:546 , TRP A:549 , NAG A:710 , HOH A:1081	BINDING SITE FOR RESIDUE NAG A 709
10	BC1	SOFTWARE	TRP A:549 , GLU A:555 , NAG A:709 , HOH A:809 , HOH A:963	BINDING SITE FOR RESIDUE NAG A 710
11	BC2	SOFTWARE	HIS A:588 , LEU A:589 , ALA A:590 , VAL A:591 , GLU A:664 , TYR A:665 , ALA A:668 , ZN A:705 , NAG A:707	BINDING SITE FOR RESIDUE TLF A 711

Asymmetric/Biological Unit

No.	Residues
1	A:348	-	A:380
2	A:358	-	A:371
3	A:405	-	A:684
4	A:425	-	A:647
5	A:457	-	A:532
6	A:481	-	A:675
7	A:491	-	A:505
8	A:502	-	A:515
9	A:573	-	A:587
10	A:625	-	A:630

Asymmetric/Biological Unit

No.	Residues
1	Cys A:625	-	Pro A:626

(no "SAP(SNP)/Variant" information available for 4G77)

(no "PROSITE Motif" information available for 4G77)

(no "Exon" information available for 4G77)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4g77a_ A: automated matches                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeeehhhhhhhhhhh.eeeeeeeee.................eeeeeeee......hhhhh...eeee........hhhhhhhhhhhhh.........eee.......hhhhh....................hhhhhhhhhhhh....eeeeehhhhhhh.............hhh.eeee.....eehhhhhhhh..eee...eeeeehhhhhhhhhhhhhhhhhhh.........................eeeeee.....hhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g77 A 342 YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCSLEACAF 686
                                   351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671    || 685 
                                                                                                                                                                                                                                                                                                                                                                        676|     
                                                                                                                                                                                                                                                                                                                                                                         681

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like II (813)

Superfamily: Periplasmic binding protein-like II (813)

Family: automated matches (267)

Protein domain: automated matches (267)

Cow (Bos taurus) [TaxId: 9913] (50)

d4g77a_

(no "CATH Domain" information available for 4G77)

(no "Pfam Domain" information available for 4G77)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Cys A:625 - Pro A:626	[ RasMol ]

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	4g77
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 11)

Sites (11, 11)

SS Bonds (10, 10)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (1, 1)

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Gene Ontology (50, 50)

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