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(-) Description

Title :  CONSTITUTIVELY ACTIVE SIN RECOMBINASE CATALTYIC DOMAIN - I100T
 
Authors :  C. S. Trejo, P. A. Rice
Date :  16 Jun 15  (Deposition) - 21 Dec 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Serine Recombinase, Site Specific Recombinase, Conformational Flexibility, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. S. Trejo, P. A. Rice
Constitutively Active Sin Recombinase Cataltyic Domain - I100T
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE TRANSPOSON TN552 DNA-INVERTASE BIN3
    Chains: B, D, A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-128
    Gene: BIN3
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 30)

Asymmetric/Biological Unit (2, 30)
No.NameCountTypeFull Name
1MSE26Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:7 , SER B:9 , GLN B:13 , ARG B:69binding site for residue SO4 B 201
2AC2SOFTWAREARG D:7 , SER D:9 , GLN D:13 , ARG D:66 , ARG D:69binding site for residue SO4 D 201
3AC3SOFTWAREARG A:7 , SER A:9 , GLN A:13 , ARG A:66 , ARG A:69binding site for residue SO4 A 201
4AC4SOFTWAREARG C:7 , SER C:9 , GLN C:13 , GLY C:37 , ARG C:66 , ARG C:69binding site for residue SO4 C 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C32)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C32)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C32)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C32)

(-) Exons   (0, 0)

(no "Exon" information available for 5C32)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......hhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 5c32 A   1 mIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEmGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLmITSLPNPLLDKFmKDLIIQILAmVSEQER 125
                            |       10        20        30        40        50    |   60        70        80        90   ||  107 |     117 |      
                            |                                                    55-MSE                            89-MSE4|      |       119-MSE  
                            1-MSE                                                                                       102      |                
                                                                                                                               109-MSE            


Chain B from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhh..hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c32 B   1 mIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEmGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLmITSLPmmNEVTGNPLLDKFmKDLIIQILAmVSEQERN 126
                            |       10        20        30        40        50    |   60        70        80        90    || 100       110       120      
                            1-MSE                                                55-MSE                            89-MSE ||          109-MSE   119-MSE   
                                                                                                                         95-MSE                           
                                                                                                                          96-MSE                          


Chain C from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee........hhhhhhhhhhhh...eee...........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c32 C   1 mIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEmGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLmITSLPmmNEVTGNPLLDKFmKDLIIQILAmVSEQERN 126
                            |       10        20        30        40        50    |   60        70        80        90    || 100       110       120      
                            1-MSE                                                55-MSE                            89-MSE ||          109-MSE   119-MSE   
                                                                                                                         95-MSE                           
                                                                                                                          96-MSE                          


Chain D from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee........hhhhhhhhhhhh...eee...........hhhhhhhhh......eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c32 D   1 mIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEmGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLmITSLPmmNPLLDKFmKDLIIQILAmVSEQERNE 127
                            |       10        20        30        40        50    |   60        70        80        90    |||105   |   115   |   125  
                            1-MSE                                                55-MSE                            89-MSE |||      |       119-MSE    
                                                                                                                         95-MSE    |                  
                                                                                                                          96-MSE   |                  
                                                                                                                          102      |                  
                                                                                                                                 109-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C32)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C32)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C32)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  5c32
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BIN3_STAAU | P20384: 2r0q 3pkz 5c31 5c34 5c35

(-) Related Entries Specified in the PDB File

2r0q A FULLL-LENGTH REGULATORY TETRAMER OF THE SAME PROTEIN
3pkz THE CATALYTIC DOMAIN OF A DIFFERENT MUTANT OF SAME PROTEIN
5c31
5c34
5c35