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(-) Description

Title :  STRUCTURAL BASIS FOR CATALYTIC ACTIVATION OF A SERINE RECOMBINASE
 
Authors :  R. A. Keenholtz, M. R. Boocock, S. J. Rowland, W. M. Stark, P. A. Rice
Date :  12 Nov 10  (Deposition) - 15 Jun 11  (Release) - 28 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Keywords :  Small Serine Recombinase, Resolvase, Dna, Recombination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Keenholtz, S. J. Rowland, M. R. Boocock, W. M. Stark, P. A. Rice
Structural Basis For Catalytic Activation Of A Serine Recombinase.
Structure V. 19 799 2011
PubMed-ID: 21645851  |  Reference-DOI: 10.1016/J.STR.2011.03.017

(-) Compounds

Molecule 1 - RECOMBINASE SIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSA1162
    Expression System Strain: ROSETTA (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PET24
    Fragment: SIN RESOLVASE CATALYTIC DOMAIN (UNP RESIDUES 1-124)
    Gene: SIN, SAP013A_018, SAP095A_006, SAP096A_020
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCD        
Biological Unit 2 (1x):     EFGH    
Biological Unit 3 (1x):         IJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric Unit (3, 24)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2GOL2Ligand/IonGLYCEROL
3SO420Ligand/IonSULFATE ION
Biological Unit 1 (1, 7)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2GOL-1Ligand/IonGLYCEROL
3SO47Ligand/IonSULFATE ION
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL-1Ligand/IonGLYCEROL
3SO46Ligand/IonSULFATE ION
Biological Unit 3 (3, 10)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL2Ligand/IonGLYCEROL
3SO47Ligand/IonSULFATE ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:7 , SER A:9 , ARG A:66 , ARG A:69 , HOH A:428BINDING SITE FOR RESIDUE SO4 A 125
02AC2SOFTWAREASN A:51 , TYR A:80 , LYS A:84 , LYS F:48BINDING SITE FOR RESIDUE SO4 A 126
03AC3SOFTWAREARG B:7 , SER B:9 , GLN B:13 , ARG B:66 , ARG B:69 , HOH B:228BINDING SITE FOR RESIDUE SO4 B 125
04AC4SOFTWAREILE A:75 , ASN A:79 , ARG A:115 , ILE C:75 , ASN C:79 , ARG C:115 , HOH C:613BINDING SITE FOR RESIDUE SO4 C 125
05AC5SOFTWAREARG C:7 , SER C:9 , GLN C:13 , ARG C:66 , ARG C:69 , HOH C:808BINDING SITE FOR RESIDUE SO4 C 126
06AC6SOFTWAREASN B:79 , ARG B:115 , ASN D:79 , LYS D:82 , ASP D:111 , ARG D:115 , HOH D:629BINDING SITE FOR RESIDUE SO4 D 125
07AC7SOFTWAREARG D:7 , SER D:9 , GLN D:13 , ARG D:66 , ARG D:69 , HOH D:297BINDING SITE FOR RESIDUE SO4 D 126
08AC8SOFTWAREARG E:7 , SER E:9 , GLN E:13 , ARG E:66 , ARG E:69BINDING SITE FOR RESIDUE SO4 E 125
09AC9SOFTWAREILE E:75 , ASN E:79 , ARG E:115 , ILE G:75 , ASN G:79 , ARG G:115BINDING SITE FOR RESIDUE SO4 E 126
10BC1SOFTWAREARG F:7 , SER F:9 , GLN F:13 , ARG F:66 , ARG F:69 , HOH F:339BINDING SITE FOR RESIDUE SO4 F 125
11BC2SOFTWAREARG G:7 , SER G:9 , GLN G:13 , ARG G:66 , ARG G:69 , HOH G:275BINDING SITE FOR RESIDUE SO4 G 125
12BC3SOFTWAREARG H:7 , SER H:9 , GLN H:13 , ARG H:66 , ARG H:69 , HOH H:345BINDING SITE FOR RESIDUE SO4 H 125
13BC4SOFTWAREASN F:79 , ARG F:115 , ILE H:75 , ASN H:79 , ARG H:115 , HOH H:496BINDING SITE FOR RESIDUE SO4 H 126
14BC5SOFTWAREASN H:14 , ARG H:17 , HOH H:149 , HOH H:900BINDING SITE FOR RESIDUE EDO H 127
15BC6SOFTWAREARG I:7 , SER I:9 , GLN I:13 , ARG I:66 , ARG I:69 , HOH I:735BINDING SITE FOR RESIDUE SO4 I 125
16BC7SOFTWAREILE I:75 , ASN I:79 , ARG I:115 , ILE K:75 , ASN K:79 , ARG K:115BINDING SITE FOR RESIDUE SO4 I 126
17BC8SOFTWAREASN I:51 , TYR I:80 , LYS I:84 , HOH I:702 , LYS J:48BINDING SITE FOR RESIDUE SO4 I 127
18BC9SOFTWAREGLN I:87 , LEU I:88 , MET I:95 , LYS I:110 , ILE I:114 , EDO I:129 , HOH I:335BINDING SITE FOR RESIDUE GOL I 128
19CC1SOFTWAREGLN I:87 , MET I:95 , LYS I:110 , GOL I:128 , HOH I:723BINDING SITE FOR RESIDUE EDO I 129
20CC2SOFTWAREARG J:7 , SER J:9 , GLN J:13 , ARG J:66 , ARG J:69BINDING SITE FOR RESIDUE SO4 J 125
21CC3SOFTWAREARG K:7 , SER K:9 , ARG K:66 , ARG K:69BINDING SITE FOR RESIDUE SO4 K 125
22CC4SOFTWARELEU K:11 , GLN K:13 , LEU K:15 , HOH K:259 , HOH K:340 , HOH K:425BINDING SITE FOR RESIDUE GOL K 126
23CC5SOFTWAREARG L:7 , SER L:9 , GLN L:13 , ARG L:66 , ARG L:69 , HOH L:285BINDING SITE FOR RESIDUE SO4 L 125
24CC6SOFTWAREASN J:79 , ASP J:111 , HOH J:728 , ASN L:79 , ARG L:115BINDING SITE FOR RESIDUE SO4 L 126

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PKZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3PKZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PKZ)

(-) PROSITE Motifs  (3, 36)

Asymmetric Unit (3, 36)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECOMBINASES_3PS51736 Resolvase/invertase-type recombinase catalytic domain profile.BIN3_STAAU1-143
 
 
 
 
 
 
 
 
 
 
 		  12A:1-124
B:1-124
C:1-124
D:1-124
E:1-124
F:1-124
G:1-124
H:1-124
I:1-124
J:1-124
K:1-124
L:1-124
2RECOMBINASES_1PS00397 Site-specific recombinases active site.BIN3_STAAU5-13
 
 
 
 
 
 
 
 
 
 
 		  12A:5-13
B:5-13
C:5-13
D:5-13
E:5-13
F:5-13
G:5-13
H:5-13
I:5-13
J:5-13
K:5-13
L:5-13
3RECOMBINASES_2PS00398 Site-specific recombinases signature 2.BIN3_STAAU56-68
 
 
 
 
 
 
 
 
 
 
 		  12A:56-68
B:56-68
C:56-68
D:56-68
E:56-68
F:56-68
G:56-68
H:56-68
I:56-68
J:56-68
K:56-68
L:56-68
Biological Unit 1 (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECOMBINASES_3PS51736 Resolvase/invertase-type recombinase catalytic domain profile.BIN3_STAAU1-143
 
 
 
 
 
 
 
 
 
 
 		  4A:1-124
B:1-124
C:1-124
D:1-124
-
-
-
-
-
-
-
-
2RECOMBINASES_1PS00397 Site-specific recombinases active site.BIN3_STAAU5-13
 
 
 
 
 
 
 
 
 
 
 		  4A:5-13
B:5-13
C:5-13
D:5-13
-
-
-
-
-
-
-
-
3RECOMBINASES_2PS00398 Site-specific recombinases signature 2.BIN3_STAAU56-68
 
 
 
 
 
 
 
 
 
 
 		  4A:56-68
B:56-68
C:56-68
D:56-68
-
-
-
-
-
-
-
-
Biological Unit 2 (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECOMBINASES_3PS51736 Resolvase/invertase-type recombinase catalytic domain profile.BIN3_STAAU1-143
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
E:1-124
F:1-124
G:1-124
H:1-124
-
-
-
-
2RECOMBINASES_1PS00397 Site-specific recombinases active site.BIN3_STAAU5-13
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
E:5-13
F:5-13
G:5-13
H:5-13
-
-
-
-
3RECOMBINASES_2PS00398 Site-specific recombinases signature 2.BIN3_STAAU56-68
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
E:56-68
F:56-68
G:56-68
H:56-68
-
-
-
-
Biological Unit 3 (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECOMBINASES_3PS51736 Resolvase/invertase-type recombinase catalytic domain profile.BIN3_STAAU1-143
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
-
-
-
-
I:1-124
J:1-124
K:1-124
L:1-124
2RECOMBINASES_1PS00397 Site-specific recombinases active site.BIN3_STAAU5-13
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
-
-
-
-
I:5-13
J:5-13
K:5-13
L:5-13
3RECOMBINASES_2PS00398 Site-specific recombinases signature 2.BIN3_STAAU56-68
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
-
-
-
-
I:56-68
J:56-68
K:56-68
L:56-68

(-) Exons   (0, 0)

(no "Exon" information available for 3PKZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkza_ A: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: A:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz A   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain A from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkza_ A: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz A   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain B from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzb_ B: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: B:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz B   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain B from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzb_ B: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz B   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain C from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzc_ C: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: C:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz C   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain C from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzc_ C: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz C   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain D from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzd_ D: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: D:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz D   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain D from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzd_ D: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz D   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain E from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkze_ E: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: E:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz E   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain E from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkze_ E: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz E   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain F from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzf_ F: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: F:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz F   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain F from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzf_ F: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz F   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain G from PDB  Type:PROTEIN  Length:122
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzg_ G: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhhh.eeee.....--....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: G:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz G   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPM--EVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90    |  100       110       120    
                                                                                                                         95 98                          


Chain G from PDB  Type:PROTEIN  Length:122
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzg_ G: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhhh.eeee.....--....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz G   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPM--EVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90    |  100       110       120    
                                                                                                                         95 98                          


Chain H from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzh_ H: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: H:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz H   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain H from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzh_ H: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz H   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain I from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzi_ I: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: I:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz I   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain I from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzi_ I: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz I   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain J from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzj_ J: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhhh.eeee...............hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: J:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz J   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain J from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzj_ J: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhhh.eeee...............hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz J   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain K from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzk_ K: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhh..hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: K:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz K   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain K from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzk_ K: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhh..hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz K   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain L from PDB  Type:PROTEIN  Length:124
 aligned with BIN3_STAAU | P20384 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
           BIN3_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzl_ L: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Resolvase-3pkzL01 L:2-124                                                                                                   Pfam domains (1)
           Pfam domains (2) -Resolvase-3pkzL02 L:2-124                                                                                                   Pfam domains (2)
           Pfam domains (3) -Resolvase-3pkzL03 L:2-124                                                                                                   Pfam domains (3)
           Pfam domains (4) -Resolvase-3pkzL04 L:2-124                                                                                                   Pfam domains (4)
           Pfam domains (5) -Resolvase-3pkzL05 L:2-124                                                                                                   Pfam domains (5)
           Pfam domains (6) -Resolvase-3pkzL06 L:2-124                                                                                                   Pfam domains (6)
           Pfam domains (7) -Resolvase-3pkzL07 L:2-124                                                                                                   Pfam domains (7)
           Pfam domains (8) -Resolvase-3pkzL08 L:2-124                                                                                                   Pfam domains (8)
           Pfam domains (9) -Resolvase-3pkzL09 L:2-124                                                                                                   Pfam domains (9)
          Pfam domains (10) -Resolvase-3pkzL10 L:2-124                                                                                                   Pfam domains (10)
          Pfam domains (11) -Resolvase-3pkzL11 L:2-124                                                                                                   Pfam domains (11)
          Pfam domains (12) -Resolvase-3pkzL12 L:2-124                                                                                                   Pfam domains (12)
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RECOMBINASES_3  PDB: L:1-124 UniProt: 1-143                                                                                  PROSITE (1)
                PROSITE (2) ----RECOMBINA------------------------------------------RECOMBINASES_-------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz L   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain L from PDB  Type:PROTEIN  Length:124
 aligned with D2J612_STAAU | D2J612 from UniProtKB/TrEMBL  Length:202

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         D2J612_STAAU     1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQE 124
               SCOP domains d3pkzl_ L: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Resolvase-3pkzL01 L:2-124                                                                                                   Pfam domains (1)
           Pfam domains (2) -Resolvase-3pkzL02 L:2-124                                                                                                   Pfam domains (2)
           Pfam domains (3) -Resolvase-3pkzL03 L:2-124                                                                                                   Pfam domains (3)
           Pfam domains (4) -Resolvase-3pkzL04 L:2-124                                                                                                   Pfam domains (4)
           Pfam domains (5) -Resolvase-3pkzL05 L:2-124                                                                                                   Pfam domains (5)
           Pfam domains (6) -Resolvase-3pkzL06 L:2-124                                                                                                   Pfam domains (6)
           Pfam domains (7) -Resolvase-3pkzL07 L:2-124                                                                                                   Pfam domains (7)
           Pfam domains (8) -Resolvase-3pkzL08 L:2-124                                                                                                   Pfam domains (8)
           Pfam domains (9) -Resolvase-3pkzL09 L:2-124                                                                                                   Pfam domains (9)
          Pfam domains (10) -Resolvase-3pkzL10 L:2-124                                                                                                   Pfam domains (10)
          Pfam domains (11) -Resolvase-3pkzL11 L:2-124                                                                                                   Pfam domains (11)
          Pfam domains (12) -Resolvase-3pkzL12 L:2-124                                                                                                   Pfam domains (12)
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkz L   1 MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQKALNFVEMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIRILAMVSEQE 124
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PKZ)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: no clan defined [family: Resolvase] (7)

(-) Gene Ontology  (5, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (BIN3_STAAU | P20384)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000150    recombinase activity    Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
biological process
    GO:0015074    DNA integration    The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
    GO:0032196    transposition    Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites.

Chain A,B,C,D,E,F,G,H,I,J,K,L   (D2J612_STAAU | D2J612)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000150    recombinase activity    Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
biological process
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BIN3_STAAU | P20384: 2r0q 5c31 5c32 5c34 5c35
        D2J612_STAAU | D2J612: 5c35

(-) Related Entries Specified in the PDB File

2r0q CRYSTAL STRUCTURE OF A SERINE RECOMBINASE DNA REGULATORY COMPLEX