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(-) Description

Title :  COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE ENABLES CREATION OF A C-C CROSS-COUPLING HECKASE
 
Authors :  M. Sharma, A. Diaz-Rodriguez, W. A. Offen, M. E. Palm-Espling, A. Porde M. R. Wormald, M. Mcdonough, G. J. Davies, B. G. Davis
Date :  24 Sep 15  (Deposition) - 14 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Protease, Subtilisin, Catalysis, Palladium, Metalloenzyme, Heck Reaction, Cross-Coupling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sharma, A. Diaz-Rodriguez, W. A. Offen, M. E. Palm-Espling, A. Pordea, M. R. Wormald, M. Mcdonough, G. J. Davies, B. G. Davis
Cooperative Bio-Metallic Selectivity In A Tailored Protease Enables Creation Of A C-C Cross-Coupling Heckase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUBTILISIN SAVINASE
    Chains: A
    EC Number: 3.4.21.62
    Engineered: YES
    Expression System: BACILLUS SUBTILIS
    Expression System Taxid: 1423
    Fragment: MATURE PEPTIDE CHAIN, RESIDUES 1-269
    Mutation: YES
    Organism Scientific: BACILLUS LENTUS
    Organism Taxid: 1467
    Synonym: ALKALINE PROTEASE, SUBTILISIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 6)

Asymmetric/Biological Unit (5, 6)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2EI31Ligand/Ion5-METHYL-2-(5-METHYLPYRIDIN-2-YL)PYRIDINE
3GOL2Ligand/IonGLYCEROL
4NI1Ligand/IonNICKEL (II) ION
5SO41Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:2 , ASP A:41 , LEU A:75 , ASN A:77 , ILE A:79 , VAL A:81BINDING SITE FOR RESIDUE CA A1276
2AC2SOFTWAREVAL A:104 , SER A:132 , ALA A:133 , THR A:134 , HOH A:2177 , HOH A:2226BINDING SITE FOR RESIDUE SO4 A1281
3AC3SOFTWARESER A:101 , GLY A:102 , LEU A:126 , GLY A:127 , HOH A:2113BINDING SITE FOR RESIDUE GOL A1277
4AC4SOFTWARETRP A:241 , GLN A:245 , ASN A:248 , HOH A:2201 , HOH A:2222BINDING SITE FOR RESIDUE GOL A1278
5AC5SOFTWAREEI3 A:1279 , HOH A:2178 , HOH A:2223 , HOH A:2224 , HOH A:2225BINDING SITE FOR RESIDUE NI A1280
6AC6SOFTWAREALA A:172 , TYR A:209 , SER A:216 , CYS A:217 , NI A:1280 , HOH A:2178 , HOH A:2224BINDING SITE FOR RESIDUE EI3 A1279

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ARD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:167 -Pro A:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ARD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ARD)

(-) Exons   (0, 0)

(no "Exon" information available for 5ARD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh.......eeeeee..........eeeeee............hhhhhhhhhhhh..............eeeeee........hhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhh..eeeee.................eeeeeee...............eeeeee...eeeee...eeeee.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ard A   1 AQSVPWGISRVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASCNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNAEAATR 275
                                    10        20        30     || 41        51     || 62        72        82        92       102       112       122       132       142       152     ||166       176       186       196       206       216       226       236       246       256       266         
                                                              36|                 57|                                                                                                158|                                                                                                                
                                                               38                  59                                                                                                 163
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ARD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ARD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ARD)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:167 - Pro A:168   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SUBS_BACLE | P29600: 1c9j 1c9m 1c9n 1gci 1iav 1jea 1ndq 1ndu 1q5p 1svn 1tk2 3bx1 4cfy 4cfz 4cg0 5aqe 5arb 5arc

(-) Related Entries Specified in the PDB File

5aqe COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE ENABLES CREATION OF A C-C CROSS-COUPLING HECKASE
5arb COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE ENABLES CREATION OF A C-C CROSS-COUPLING HECKASE
5arc COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE ENABLES CREATION OF A C-C CROSS-COUPLING HECKASE