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Asym./Biol. Unit (Jmol Viewer)

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Title :   BACILLUS LENTUS SUBTILISIN

Authors :   X. Pan, R. Bott, C. E. Glatz

Date :   09 Dec 02 (Deposition) - 06 Apr 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Subtilisin, Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Pan, R. Bott, C. E. Glatz
Subtilisin Surface Properties And Crystal Growth Kinetics
J. Cryst. Growth V. 254 492 2003
PubMed: search | Reference-DOI: 10.1016/S0022-0248(03)01178-3
(for further references see the PDB file header)

Molecule 1 - SUBTILISIN SAVINASE
	Chains	:	A
	EC Number	:	3.4.21.62
	Organism Scientific	:	BACILLUS LENTUS
	Organism Taxid	:	1467
	Synonym	:	ALKALINE PROTEASE

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:2 , ASP A:41 , LEU A:75 , ASN A:77 , ILE A:79 , VAL A:81	BINDING SITE FOR RESIDUE CA A 276
2	AC2	SOFTWARE	ALA A:169 , TYR A:171 , ALA A:174 , HOH A:332	BINDING SITE FOR RESIDUE CA A 277

(no "SS Bond" information available for 1NDQ)

Asymmetric/Biological Unit

No.	Residues
1	Tyr A:167	-	Pro A:168

(no "SAP(SNP)/Variant" information available for 1NDQ)

Asymmetric/Biological Unit (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUBTILASE_ASP	PS00136	Serine proteases, subtilase family, aspartic acid active site.	SUBS_BACLE	28-38	1	A:28-39
2	SUBTILASE_HIS	PS00137	Serine proteases, subtilase family, histidine active site.	SUBS_BACLE	62-72	1	A:64-74
3	SUBTILASE_SER	PS00138	Serine proteases, subtilase family, serine active site.	SUBS_BACLE	213-223	1	A:219-229

(no "Exon" information available for 1NDQ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:269
 aligned with SUBS_BACLE | P29600 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         
           SUBS_BACLE     1 AQSVPWGISRVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNAEAATR 269
               SCOP domains d1ndqa_ A: Subtilisin                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1ndqA00 A:1-275  [code=3.40.50.200, no name defined]                                                                                                                                                                                                                          CATH domains
               Pfam domains --------------------------Peptidase_S8-1ndqA01 A:27-275                                                                                                                                                                                                                       Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh.......eeeeee..........eeeeee............hhhhhhhhhhhh..............eeeeee........hhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhh.eeeee..................eeeeee...............eeeeee...eeeee...eeeee.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....hhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------SUBTILASE_A-----------------------SUBTILASE_H--------------------------------------------------------------------------------------------------------------------------------------------SUBTILASE_S---------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ndq A   1 AQSVPWGISRVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNAEAATR 275
                                    10        20        30     || 41        51     || 62        72        82        92       102       112       122       132       142       152     ||166       176       186       196       206       216       226       236       246       256       266         
                                                              36|                 57|                                                                                                158|                                                                                                                
                                                               38                  59                                                                                                 163

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Subtilisin-like (227)

Superfamily: Subtilisin-like (227)

Family: Subtilases (190)

Protein domain: Subtilisin (91)

Bacillus lentus [TaxId: 1467] (9)

d1ndqa_

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.200, no name defined] (198)

Bacillus lentus. Organism_taxid: 1467 (4)

1ndqA00

A:1-275

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Peptidase_S8] (104)

Family: Peptidase_S8 (104)

Bacillus lentus (6)

Peptidase_S8-1ndqA01

A:27-275

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (SUBS_BACLE | P29600)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0030435	sporulation resulting in formation of a cellular spore	The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric/Biological Unit
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		Tyr A:167 - Pro A:168	[ RasMol ]

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Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

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