4CFZ - JenaLib

Title :   SAVINASE CRYSTAL STRUCTURES FOR COMBINED SINGLE CRYSTAL DIFFRACTION AND POWDER DIFFRACTION ANALYSIS

Authors :   C. G. Frankaer, O. V. Moroz, J. P. Turkenburg, S. I. Aspmo, M. Thymark, E. K. Stahla, J. E. Nielsen, K. S. Wilson, P. Harris

Date :   19 Nov 13 (Deposition) - 09 Apr 14 (Release) - 16 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.57

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Single Crystal Analysis, Powder Diffraction, Quality Control, Microcrystalline Suspension (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. G. Frankaer, O. V. Moroz, J. P. Turkenburg, S. I. Aspmo, M. Thymark, E. P. Friis, K. Stahl, J. E. Nielsen, K. S. Wilson, P. Harris
Analysis Of An Industrial Production Suspension Of Bacillus Lentus Subtilisin Crystals By Powder Diffraction: A Powerful Quality-Control Tool.
Acta Crystallogr. , Sect. D V. 70 1115 2014
PubMed-ID: 24699655 | Reference-DOI: 10.1107/S1399004714001497

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:2 , ASP A:40 , LEU A:73 , ASN A:75 , ILE A:77 , VAL A:79	BINDING SITE FOR RESIDUE CA A 301
2	AC2	SOFTWARE	ALA A:163 , ARG A:164 , TYR A:165 , ALA A:168 , HOH A:2183 , HOH A:2190	BINDING SITE FOR RESIDUE NA A 302
3	AC3	SOFTWARE	SER A:234 , HOH A:2228 , HOH A:2266	BINDING SITE FOR RESIDUE SO4 A 401
4	AC4	SOFTWARE	PRO A:5 , TRP A:6 , HOH A:2015 , HOH A:2017 , HOH A:2209 , HOH A:2210 , HOH A:2267	BINDING SITE FOR RESIDUE SO4 A 402
5	AC5	SOFTWARE	SER A:158 , ARG A:164 , ALA A:188 , HOH A:2177 , HOH A:2180	BINDING SITE FOR RESIDUE SO4 A 403
6	AC6	SOFTWARE	ASN A:138 , HOH A:2154 , HOH A:2156 , HOH A:2188	BINDING SITE FOR RESIDUE SO4 A 404
7	AC7	SOFTWARE	SER A:130 , ALA A:131 , THR A:132 , ASN A:212 , HOH A:2145 , HOH A:2218	BINDING SITE FOR RESIDUE SO4 A 405
8	AC8	SOFTWARE	TYR A:186 , ASN A:255 , HOH A:2176 , HOH A:2205	BINDING SITE FOR RESIDUE SO4 A 406

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 3)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:269
 aligned with SUBS_BACLE | P29600 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         
           SUBS_BACLE     1 AQSVPWGISRVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNAEAATR 269
               SCOP domains d4cfza_ A: Subtilisin                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh.......eeeeee..........eeeeee............hhhhhhhhhhhh..............eeeeee........hhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhh..eeeee.................eeeeeee.................eeee...eeeee...eeeee.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------SUBTILASE_A-----------------------SUBTILASE_H--------------------------------------------------------------------------------------------------------------------------------------------SUBTILASE_S---------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cfz A   1 AQSVPWGISRVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNAEAATR 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (SUBS_BACLE | P29600)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0030435	sporulation resulting in formation of a cellular spore	The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	Sites
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	Cis Peptide Bonds
		Tyr A:161 - Pro A:162	[ RasMol ]

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	4cfz
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