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5AFA
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACCASE FROM THERMUS THERMOPHILUS HB27 COMPLEXED WITH AG, CRYSTAL OF THE HOLOENZYME SOAKED FOR 30 M IN 5 MM AGNO3 AT 278 K.
Authors
:
N. Jimenez-Arroyo, E. Rudino-Pinera
Date
:
19 Jan 15 (Deposition) - 17 Feb 16 (Release) - 17 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Multicopper Oxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Jimenez-Arroyo, C. S. Cardona-Felix, S. P. Rojas-Trejo, E. Rudino-Pinera
Structural Function Of The Methionine-Rich Beta-Hairpin In The Laccase For T. Thermophilus.
To Be Published
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: SILVER ION (AGa)
1b: SILVER ION (AGb)
1c: SILVER ION (AGc)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
4c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
4d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
4e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
4f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
4g: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDg)
4h: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDh)
5a: HYDROXIDE ION (OHa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AG
3
Ligand/Ion
SILVER ION
2
CU
4
Ligand/Ion
COPPER (II) ION
3
MPD
6
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
MRD
8
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
5
OH
1
Ligand/Ion
HYDROXIDE ION
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:248 , LEU A:263 , ARG A:268 , TYR A:414 , LYS A:418 , MRD A:1467
BINDING SITE FOR RESIDUE MPD A1463
02
AC2
SOFTWARE
ARG A:436 , HOH A:2375 , HOH A:2376
BINDING SITE FOR RESIDUE MRD A1464
03
AC3
SOFTWARE
LYS A:104 , THR A:212 , ARG A:280 , LYS A:438 , GLY A:439 , HOH A:2374
BINDING SITE FOR RESIDUE MRD A1465
04
AC4
SOFTWARE
TRP A:194 , ARG A:453 , MPD A:1473
BINDING SITE FOR RESIDUE MRD A1466
05
AC5
SOFTWARE
LEU A:256 , GLU A:260 , LEU A:261 , MPD A:1463 , HOH A:2253
BINDING SITE FOR RESIDUE MRD A1467
06
AC6
SOFTWARE
GLU A:127 , LEU A:128 , SER A:334 , HOH A:2234
BINDING SITE FOR RESIDUE MRD A1468
07
AC7
SOFTWARE
GLU A:257 , ARG A:276 , MPD A:1475 , HOH A:2232 , HOH A:2257
BINDING SITE FOR RESIDUE MRD A1469
08
AC8
SOFTWARE
PRO A:28 , GLU A:29 , ASN A:206 , MRD A:1474 , HOH A:2008 , HOH A:2064
BINDING SITE FOR RESIDUE MPD A1470
09
AC9
SOFTWARE
PRO A:25 , SER A:26 , VAL A:214 , GLN A:216 , ASN A:362 , GLN A:364 , HOH A:2003 , HOH A:2005
BINDING SITE FOR RESIDUE MPD A1471
10
BC1
SOFTWARE
LYS A:31 , GLY A:64 , HOH A:2061
BINDING SITE FOR RESIDUE MPD A1472
11
BC2
SOFTWARE
PRO A:191 , ARG A:453 , MRD A:1466 , HOH A:2188
BINDING SITE FOR RESIDUE MPD A1473
12
BC3
SOFTWARE
GLN A:376 , ALA A:377 , GLN A:378 , THR A:379 , MPD A:1470
BINDING SITE FOR RESIDUE MRD A1474
13
BC4
SOFTWARE
ASP A:239 , ARG A:276 , MRD A:1469
BINDING SITE FOR RESIDUE MPD A1475
14
BC5
SOFTWARE
PRO A:144 , PRO A:188 , HIS A:189 , HOH A:2187
BINDING SITE FOR RESIDUE MRD A1476
15
BC6
SOFTWARE
MET A:195 , MET A:293 , MET A:354 , MET A:391 , HOH A:2193
BINDING SITE FOR RESIDUE AG A1477
16
BC7
SOFTWARE
MET A:296 , MET A:301 , HIS A:303 , MET A:305
BINDING SITE FOR RESIDUE AG A1478
17
BC8
SOFTWARE
MET A:192 , MET A:295 , HOH A:2310 , HOH A:2378
BINDING SITE FOR RESIDUE AG A1479
18
BC9
SOFTWARE
HIS A:137 , HIS A:398 , HIS A:444 , CU A:1483 , OH A:1484
BINDING SITE FOR RESIDUE CU A1480
19
CC1
SOFTWARE
HIS A:97 , TRP A:133 , HIS A:135 , HIS A:446 , OH A:1484
BINDING SITE FOR RESIDUE CU A1481
20
CC2
SOFTWARE
HIS A:393 , CYS A:445 , HIS A:450 , MET A:455
BINDING SITE FOR RESIDUE CU A1482
21
CC3
SOFTWARE
HIS A:95 , HIS A:97 , HIS A:396 , HIS A:398 , CU A:1480 , OH A:1484 , HOH A:2092
BINDING SITE FOR RESIDUE CU A1483
22
CC4
SOFTWARE
HIS A:95 , HIS A:135 , HIS A:137 , HIS A:396 , HIS A:398 , HIS A:444 , HIS A:446 , CU A:1480 , CU A:1481 , CU A:1483 , HOH A:2144
BINDING SITE FOR RESIDUE OH A1484
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Asym.Unit (93 KB)
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