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(-) Description

Title :  CRYSTAL STRUCTURE OF BHGH81 MUTANT IN COMPLEX WITH LAMINARO-PENTAOSE
 
Authors :  B. Pluvinage, A. B. Boraston
Date :  03 Feb 17  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  (Alpha/Beta)6 Barrel, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Pluvinage, A. Fillo, P. Massel, A. B. Boraston
The Quaternary Structure Of Beta-1, 3-Glucan Contributes To Its Recognition And Hydrolysis By A Multimodular Family 81 Glycoside Hydrolase
Structure 2017
PubMed: search

(-) Compounds

Molecule 1 - BH0236 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 28-779
    Gene: BH0236
    Mutation: YES
    Organism Scientific: BACILLUS HALODURANS (STRAIN ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
    Organism Taxid: 272558
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 26)

Asymmetric/Biological Unit (3, 26)
No.NameCountTypeFull Name
1BGC10Ligand/IonBETA-D-GLUCOSE
2EDO5Ligand/Ion1,2-ETHANEDIOL
3PO411Ligand/IonPHOSPHATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:315 , SER A:579 , ASN A:582 , GLU A:583 , HIS A:589 , HOH A:1020 , HOH A:1030 , HOH A:1088binding site for residue PO4 A 811
02AC2SOFTWAREGLU A:280 , GLU A:559 , ARG A:567 , HIS A:732 , PRO A:733 , HOH A:1033 , HOH A:1271 , HOH A:1293 , HOH A:1401binding site for residue PO4 A 812
03AC3SOFTWAREHIS A:458 , BGC A:801 , BGC A:802 , HOH A:914 , HOH A:918 , HOH A:923 , HOH A:965 , HOH A:1028 , HOH A:1446binding site for residue PO4 A 813
04AC4SOFTWAREASP A:201 , TRP A:203 , SER A:213 , HIS A:217 , HIS A:219 , LYS A:253 , HOH A:1082 , HOH A:1303binding site for residue PO4 A 814
05AC5SOFTWAREHIS A:641 , PRO A:642 , ASP A:643 , TYR A:644 , EDO A:824 , HOH A:981 , HOH A:986binding site for residue PO4 A 815
06AC6SOFTWAREMET A:578 , ASN A:582 , HIS A:640 , HOH A:915 , HOH A:1030 , HOH A:1059 , HOH A:1088 , HOH A:1346binding site for residue PO4 A 816
07AC7SOFTWAREHIS A:170 , ASP A:189 , HOH A:1159 , HOH A:1170binding site for residue PO4 A 817
08AC8SOFTWAREGLU A:124 , GLU A:413 , ARG A:416 , ALA A:484 , HOH A:1106binding site for residue PO4 A 818
09AC9SOFTWAREASP A:365 , ARG A:368 , GLU A:685 , TYR A:712 , HIS A:716 , HOH A:920binding site for residue PO4 A 819
10AD1SOFTWAREARG A:509 , ASP A:510 , TYR A:516 , HOH A:949 , HOH A:990 , HOH A:1005 , HOH A:1006 , HOH A:1039 , HOH A:1391binding site for residue PO4 A 820
11AD2SOFTWAREALA A:113 , PRO A:114 , HIS A:115binding site for residue PO4 A 821
12AD3SOFTWAREASP A:155 , ASN A:157 , TYR A:160 , THR A:175 , VAL A:269 , ARG A:270 , HOH A:1042 , HOH A:1142binding site for residue EDO A 822
13AD4SOFTWAREGLY A:407 , TYR A:409 , GLU A:410 , BGC A:808 , BGC A:809 , HOH A:1243 , HOH A:1474binding site for residue EDO A 823
14AD5SOFTWAREGLU A:204 , MET A:205 , ASN A:206 , VAL A:588 , HIS A:589 , PO4 A:815 , HOH A:1484binding site for residue EDO A 824
15AD6SOFTWAREASP A:45 , LYS A:437 , GLY A:438 , HOH A:934 , HOH A:1313 , HOH A:1624binding site for residue EDO A 825
16AD7SOFTWAREVAL A:273 , ARG A:509 , HOH A:911 , HOH A:990 , HOH A:1329binding site for residue EDO A 826
17AD8SOFTWARETYR A:387 , LYS A:391 , HIS A:458 , ARG A:463 , ASN A:465 , ASP A:466 , PHE A:469 , HIS A:470 , ALA A:529 , ASP A:530 , ASN A:540 , GLN A:542 , GLU A:546 , TRP A:615 , TRP A:664 , GLU A:699 , ARG A:704 , PO4 A:813 , HOH A:923 , HOH A:940 , HOH A:964 , HOH A:995 , HOH A:997 , HOH A:1028 , HOH A:1158 , HOH A:1176 , HOH A:1403 , HOH A:1436 , HOH A:1445 , HOH A:1446 , HOH A:1514 , HOH A:1544binding site for Poly-Saccharide residues BGC A 801 through BGC A 805
18AD9SOFTWAREMET A:91 , TYR A:387 , LYS A:391 , TYR A:409 , HIS A:458 , ASN A:465 , ASP A:466 , PHE A:469 , HIS A:470 , ALA A:529 , ASP A:530 , PHE A:535 , ASP A:536 , ALA A:537 , ASN A:540 , GLN A:542 , GLU A:546 , ILE A:604 , TRP A:606 , LYS A:609 , ASP A:611 , THR A:614 , TRP A:615 , TRP A:616 , ASN A:617 , TRP A:664 , GLU A:699 , ARG A:704 , BGC A:801 , PO4 A:813 , EDO A:823 , HOH A:903 , HOH A:923 , HOH A:939 , HOH A:940 , HOH A:958 , HOH A:989 , HOH A:991 , HOH A:997 , HOH A:1028 , HOH A:1106 , HOH A:1109 , HOH A:1158 , HOH A:1176 , HOH A:1196 , HOH A:1243 , HOH A:1256 , HOH A:1403 , HOH A:1445 , HOH A:1514 , HOH A:1523 , HOH A:1540 , HOH A:1544binding site for Poly-Saccharide residues BGC A 806 through BGC A 810

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UPO)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1His A:96 -Pro A:97
2Tyr A:454 -His A:455
3Leu A:629 -Pro A:630

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UPO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UPO)

(-) Exons   (0, 0)

(no "Exon" information available for 5UPO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:752
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee............hhhhhhhh.......................hhhhhh...........eeeee..eeeee..hhhhheeeee....eeeee......eeeee.......eeeeeee...eeeeeeee..eeeeeeee....eeeeeee...eeee.....eeeee...eeeee.....eeeee.............eeee...eeeeee....hhhhhhhhhhhh.eeeeeeeeeeeee....eeeeeeeeeeee........eeeeehhhhhhhhhhhhhh.eeeeeeeee..eeeeeeee.eeeeeee..............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeee....eeeee...........hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh................................ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eee..eeee........hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhee..........eeeeee..eeeeeeee.....eeee.....eeee...ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5upo A  27 MHAVSVGKGSYATEFPEIDFGGINDPGFRDQQGEPPATIYRSDRVTGPMQTNSWWGSLAVDRFSMNQYPHPFSVRHRAEGLHVFYDAPHNMVVHENREAGTWHIHGAIGTDFTIKHSGTANFEQAVVDDYNDWYVRGLLENGAHQMAITYGVGSPYIFVEYEDGSAVLDFDIAPDVWEMNGHVIGFSTHDHKHYAAFAPPGQNWSGIGSKTLTNNADYIAIAKLPEKDGNMLAKFEQYAYSVVRDAVADWTYDEATGTVTTTFEVTTEAKVQGAPDGTIFALYPHQYRHLASSSENQLLQNYQYEIIRGTMIGLEGKRFTTELTYPGVLPSLPDLGDYDRERLIGYLHDATSDYPTGSDTYELGKYIGKLATLAPIADQMGEYELAEQFRGELKDILEDWLQATNASGQLKGKNLFYYNENWGTILGYHAAHSSATRINDHHFHYGYFVKAAAEIARADQEWAKSENWGGMIDLLIRDFMADRDDDLFPYLRMFDPYSGNSWADGLATFDAGNNQQSSSEAMHAWTNVILWAEATGNKALRDRAIYLYTTEMSAINEYFFDVHQEIFPEEYGPEIVTINWGGKMDHATWWNSGKVEKYAINWLPFHGGSLYLGHHPDYVDRAYEELRRDIGSTDWNLWSNLVWMYRAFTNPDDALQQMEASIDDYGLFDPGNEKIIERGSTKAQTYHWIHNLAELGRVDPTVTANHPIYAVFNKNGNRTYIVYNFSDSPITVQFSDGHSIQVEPHSFNIGNG 778
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UPO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UPO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UPO)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    His A:96 - Pro A:97   [ RasMol ]  
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  5upo
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  Q9KG76_BACHD | Q9KG76
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9KG76_BACHD | Q9KG76: 5t49 5t4a 5t4c 5t4g 5upi 5upm 5upn 5v1w
UniProtKB/TrEMBL
        Q9KG76_BACHD | Q9KG76: 1w9s 1w9t 1w9w

(-) Related Entries Specified in the PDB File

5upi 5upm 5upn