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(-) Description

Title :  CRYSTAL STRUCTURE OF BHGH81 IN COMPLEX WITH LAMINARO-BIOSE
 
Authors :  B. Pluvinage, A. B. Boraston
Date :  02 Mar 17  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  (Alpha/Beta)6 Barrel, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Pluvinage, A. Fillo, P. Massel, A. B. Boraston
The Quaternary Structure Of Beta-1, 3-Glucan Contributes To Its Recognition And Hydrolysis By A Multimodular Family 81 Glycoside Hydrolase
Structure 2017
PubMed: search

(-) Compounds

Molecule 1 - GLYCOSIDE HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 28-778
    Gene: BH0236
    Organism Scientific: BACILLUS HALODURANS (STRAIN ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
    Organism Taxid: 272558
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125
    Synonym: BH0236 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 21)

Asymmetric/Biological Unit (3, 21)
No.NameCountTypeFull Name
1BGC4Ligand/IonBETA-D-GLUCOSE
2EDO9Ligand/Ion1,2-ETHANEDIOL
3PO48Ligand/IonPHOSPHATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:280 , GLU A:559 , ARG A:567 , HIS A:732 , PRO A:733 , HOH A:1248 , HOH A:1301 , HOH A:1308binding site for residue PO4 A 805
02AC2SOFTWAREMET A:578 , ASN A:582 , HIS A:640 , HOH A:944 , HOH A:1046 , HOH A:1082 , HOH A:1087 , HOH A:1256binding site for residue PO4 A 806
03AC3SOFTWAREASP A:201 , TRP A:203 , SER A:213 , HIS A:217 , HIS A:219 , LYS A:253 , HOH A:955binding site for residue PO4 A 807
04AC4SOFTWAREHIS A:315 , SER A:579 , ASN A:582 , GLU A:583 , HIS A:589 , HOH A:944 , HOH A:1087binding site for residue PO4 A 808
05AC5SOFTWAREHIS A:170 , ASP A:189 , HOH A:993binding site for residue PO4 A 809
06AC6SOFTWAREGLU A:124 , GLU A:413 , ARG A:416 , ALA A:484 , HOH A:959binding site for residue PO4 A 810
07AC7SOFTWAREHIS A:641 , PRO A:642 , ASP A:643 , TYR A:644 , HOH A:903 , HOH A:994 , HOH A:1072binding site for residue PO4 A 811
08AC8SOFTWAREARG A:368 , GLU A:685 , TYR A:712 , HIS A:716binding site for residue PO4 A 812
09AC9SOFTWARETYR A:313 , THR A:336 , GLU A:591 , HOH A:905 , HOH A:1019 , HOH A:1192binding site for residue EDO A 813
10AD1SOFTWAREHIS A:120 , HIS A:129 , HIS A:131binding site for residue EDO A 814
11AD2SOFTWAREASP A:155 , ASN A:157 , TYR A:160 , THR A:175 , VAL A:269 , ARG A:270binding site for residue EDO A 815
12AD3SOFTWAREALA A:113 , PRO A:114 , HIS A:115 , HOH A:1444binding site for residue EDO A 816
13AD4SOFTWAREARG A:101 , ARG A:103 , GLU A:105 , HIS A:108 , HOH A:1429binding site for residue EDO A 817
14AD5SOFTWAREASP A:275 , TRP A:276 , THR A:277 , THR A:286 , THR A:288binding site for residue EDO A 818
15AD6SOFTWARETYR A:387 , HIS A:458 , ASP A:466 , PHE A:469 , HIS A:470 , GLU A:546 , BGC A:801 , BGC A:804binding site for residue EDO A 819
16AD7SOFTWARESER A:357 , LEU A:358 , GLN A:710 , HIS A:713 , TRP A:714 , HOH A:1068binding site for residue EDO A 820
17AD8SOFTWAREGLN A:171 , GLU A:186 , TYR A:187 , GLU A:188binding site for residue EDO A 821
18AD9SOFTWAREHIS A:458 , ARG A:463 , ASN A:465 , ASP A:466 , ALA A:529 , ASP A:530 , PHE A:535 , ASN A:540 , TRP A:615 , EDO A:819 , HOH A:923 , HOH A:933 , HOH A:976 , HOH A:1004 , HOH A:1008 , HOH A:1026 , HOH A:1069 , HOH A:1253binding site for Poly-Saccharide residues BGC A 801 through BGC A 802
19AE1SOFTWARETYR A:387 , LYS A:391 , HIS A:458 , TRP A:616 , ILE A:626 , TRP A:664 , GLU A:699 , ARG A:704 , EDO A:819 , HOH A:1008 , HOH A:1017 , HOH A:1021 , HOH A:1027 , HOH A:1031 , HOH A:1077binding site for Poly-Saccharide residues BGC A 803 through BGC A 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5V1W)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1His A:96 -Pro A:97
2Tyr A:454 -His A:455
3Leu A:629 -Pro A:630

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V1W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V1W)

(-) Exons   (0, 0)

(no "Exon" information available for 5V1W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:752
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee............hhhhhhhh.......................hhhhhh...........eeeee..eeeee..hhhhheeeee....eeeee......eeeee.......eeeeeee...eeeeeeee..eeeeeeee....eeeeeee...eeee.....eeeee...eeeee.....eeeee.............eeee...eeeeee....hhhhhhhhhhhh.eeeeeeeeeeee.....eeeeeeeeeeee........eeeeehhhhhhhhhhhhhh.eeeeeeeee..eeeeeeee.eeeeeee..............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.............eeeee....eeeee...........hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh................................ee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..................eee..eeee........hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhee..........eeeeee..eeeeeeee.....eeee.....eeee...ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5v1w A  27 MHAVSVGKGSYATEFPEIDFGGINDPGFRDQQGEPPATIYRSDRVTGPMQTNSWWGSLAVDRFSMNQYPHPFSVRHRAEGLHVFYDAPHNMVVHENREAGTWHIHGAIGTDFTIKHSGTANFEQAVVDDYNDWYVRGLLENGAHQMAITYGVGSPYIFVEYEDGSAVLDFDIAPDVWEMNGHVIGFSTHDHKHYAAFAPPGQNWSGIGSKTLTNNADYIAIAKLPEKDGNMLAKFEQYAYSVVRDAVADWTYDEATGTVTTTFEVTTEAKVQGAPDGTIFALYPHQYRHLASSSENQLLQNYQYEIIRGTMIGLEGKRFTTELTYPGVLPSLPDLGDYDRERLIGYLHDATSDYPTGSDTYELGKYIGKLATLAPIADQMGEYELAEQFRGELKDILEDWLQATNASGQLKGKNLFYYNENWGTILGYHAAHSSATRINDHHFHYGYFVKAAAEIARADQEWAKSENWGGMIDLLIRDFMADRDDDLFPYLRMFDPYSGNSWADGLATFDAGNNQESSSEAMHAWTNVILWAEATGNKALRDRAIYLYTTEMSAINEYFFDVHQEIFPEEYGPEIVTINWGGKMDHATWWNSGKVEKYAINWLPFHGGSLYLGHHPDYVDRAYEELRRDIGSTDWNLWSNLVWMYRAFTNPDDALQQMEASIDDYGLFDPGNEKIIERGSTKAQTYHWIHNLAELGRVDPTVTANHPIYAVFNKNGNRTYIVYNFSDSPITVQFSDGHSIQVEPHSFNIGNG 778
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V1W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V1W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V1W)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Q9KG76_BACHD | Q9KG76
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9KG76_BACHD | Q9KG76: 5t49 5t4a 5t4c 5t4g 5upi 5upm 5upn 5upo
UniProtKB/TrEMBL
        Q9KG76_BACHD | Q9KG76: 1w9s 1w9t 1w9w

(-) Related Entries Specified in the PDB File

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