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(-) Description

Title :  CRYSTAL STRUCTURE OF BHGH81 MUTANT IN COMPLEX WITH LAMINARO-BIOSE
 
Authors :  B. Pluvinage, A. B. Boraston
Date :  03 Feb 17  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  (Alpha/Beta)6 Barrel, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Pluvinage, A. Fillo, P. Massel, A. B. Boraston
The Quaternary Structure Of Beta-1, 3-Glucan Contributes To Its Recognition And Hydrolysis By A Multimodular Family 81 Glycoside Hydrolase
Structure 2017
PubMed: search

(-) Compounds

Molecule 1 - BH0236 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 28-779
    Gene: BH0236
    Mutation: YES
    Organism Scientific: BACILLUS HALODURANS (STRAIN ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
    Organism Taxid: 272558
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 22)

Asymmetric/Biological Unit (3, 22)
No.NameCountTypeFull Name
1BGC4Ligand/IonBETA-D-GLUCOSE
2EDO9Ligand/Ion1,2-ETHANEDIOL
3PO49Ligand/IonPHOSPHATE ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:280 , GLU A:559 , ARG A:567 , HIS A:732 , PRO A:733 , HOH A:1017 , HOH A:1038 , HOH A:1213 , HOH A:1273binding site for residue PO4 A 805
02AC2SOFTWAREHIS A:315 , SER A:579 , ASN A:582 , GLU A:583 , HIS A:589 , HOH A:947 , HOH A:997 , HOH A:1231binding site for residue PO4 A 806
03AC3SOFTWAREASP A:201 , TRP A:203 , SER A:213 , HIS A:217 , HIS A:219 , LYS A:253 , HOH A:1149 , HOH A:1474binding site for residue PO4 A 807
04AC4SOFTWAREHIS A:641 , PRO A:642 , ASP A:643 , TYR A:644 , HOH A:942 , HOH A:1042binding site for residue PO4 A 808
05AC5SOFTWAREHIS A:170 , ASP A:189 , HOH A:969 , HOH A:986binding site for residue PO4 A 809
06AC6SOFTWAREASP A:365 , ARG A:368 , GLU A:685 , TYR A:712 , HIS A:716 , HOH A:949 , HOH A:1055binding site for residue PO4 A 810
07AC7SOFTWAREGLU A:124 , GLU A:413 , ARG A:416 , ALA A:484 , HOH A:928binding site for residue PO4 A 811
08AC8SOFTWAREMET A:578 , ASN A:582 , HIS A:640 , HOH A:906 , HOH A:947 , HOH A:997 , HOH A:1135 , HOH A:1383binding site for residue PO4 A 812
09AC9SOFTWAREHIS A:458 , BGC A:801 , BGC A:802 , HOH A:1028 , HOH A:1235 , HOH A:1331 , HOH A:1360binding site for residue PO4 A 813
10AD1SOFTWAREASP A:155 , ASN A:157 , TYR A:160 , ARG A:162 , THR A:175 , VAL A:269 , ARG A:270 , HOH A:903binding site for residue EDO A 814
11AD2SOFTWARETYR A:387 , HIS A:458 , ASP A:466 , PHE A:469 , HIS A:470 , GLU A:546 , BGC A:801 , BGC A:804 , HOH A:1454binding site for residue EDO A 815
12AD3SOFTWAREALA A:113 , PRO A:114 , HIS A:115binding site for residue EDO A 816
13AD4SOFTWAREASP A:275 , THR A:277 , THR A:286 , THR A:288binding site for residue EDO A 817
14AD5SOFTWARETYR A:313 , GLY A:335 , THR A:336 , GLU A:591 , HOH A:907 , HOH A:912 , HOH A:1011binding site for residue EDO A 818
15AD6SOFTWARESER A:357 , LEU A:358 , THR A:398 , GLN A:710 , TRP A:714 , HOH A:981 , HOH A:1245binding site for residue EDO A 819
16AD7SOFTWAREASP A:201 , TRP A:203 , LYS A:253 , HOH A:1634binding site for residue EDO A 820
17AD8SOFTWAREHIS A:120 , HIS A:129 , HIS A:131 , HOH A:972binding site for residue EDO A 821
18AD9SOFTWARETHR A:614 , TRP A:615 , HOH A:957 , HOH A:1022 , HOH A:1297binding site for residue EDO A 822
19AE1SOFTWAREHIS A:458 , ARG A:463 , ASN A:465 , ASP A:466 , ALA A:529 , ASP A:530 , PHE A:535 , ASN A:540 , TRP A:615 , PO4 A:813 , EDO A:815 , HOH A:950 , HOH A:1028 , HOH A:1064 , HOH A:1182 , HOH A:1189 , HOH A:1205 , HOH A:1248 , HOH A:1310binding site for Poly-Saccharide residues BGC A 801 through BGC A 802
20AE2SOFTWARETYR A:387 , LYS A:391 , HIS A:458 , TRP A:616 , TRP A:664 , GLU A:699 , ARG A:704 , EDO A:815 , HOH A:980 , HOH A:1054 , HOH A:1064 , HOH A:1065 , HOH A:1166 , HOH A:1206 , HOH A:1276 , HOH A:1301 , HOH A:1319 , HOH A:1560binding site for Poly-Saccharide residues BGC A 803 through BGC A 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UPI)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1His A:96 -Pro A:97
2Tyr A:454 -His A:455
3Leu A:629 -Pro A:630

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UPI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UPI)

(-) Exons   (0, 0)

(no "Exon" information available for 5UPI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:752
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee............hhhhhhh........................hhhhhh...........eeeee..eeeee..hhhhheeeee....eeeee......eeeee.......eeeeeee...eeeeeeee..eeeeeeee....eeeeeee...eeee.....eeeee...eeeee.....eeeee.............eeee...eeeeee....hhhhhhhhhhhh.eeeeeeeeeeeee....eeeeeeeeeeee........eeeeehhhhhhhhhhhhhh.eeeeeeeee..eeeeeeee.eeeeeee..............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.............eeeee....eeeee...........hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh................................ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eee..eeee........hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhee..........eeeeee..eeeeeeee.....eeee.....eeee...ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5upi A  28 HAVSVGKGSYATEFPEIDFGGINDPGFRDQQGEPPATIYRSDRVTGPMQTNSWWGSLAVDRFSMNQYPHPFSVRHRAEGLHVFYDAPHNMVVHENREAGTWHIHGAIGTDFTIKHSGTANFEQAVVDDYNDWYVRGLLENGAHQMAITYGVGSPYIFVEYEDGSAVLDFDIAPDVWEMNGHVIGFSTHDHKHYAAFAPPGQNWSGIGSKTLTNNADYIAIAKLPEKDGNMLAKFEQYAYSVVRDAVADWTYDEATGTVTTTFEVTTEAKVQGAPDGTIFALYPHQYRHLASSSENQLLQNYQYEIIRGTMIGLEGKRFTTELTYPGVLPSLPDLGDYDRERLIGYLHDATSDYPTGSDTYELGKYIGKLATLAPIADQMGEYELAEQFRGELKDILEDWLQATNASGQLKGKNLFYYNENWGTILGYHAAHSSATRINDHHFHYGYFVKAAAEIARADQEWAKSENWGGMIDLLIRDFMADRDDDLFPYLRMFDPYSGNSWADGLATFDAGNNQQSSSEAMHAWTNVILWAEATGNKALRDRAIYLYTTEMSAINEYFFDVHQEIFPEEYGPEIVTINWGGKMDHATWWNSGKVEKYAINWLPFHGGSLYLGHHPDYVDRAYEELRRDIGSTDWNLWSNLVWMYRAFTNPDDALQQMEASIDDYGLFDPGNEKIIERGSTKAQTYHWIHNLAELGRVDPTVTANHPIYAVFNKNGNRTYIVYNFSDSPITVQFSDGHSIQVEPHSFNIGNGD 779
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UPI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UPI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UPI)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9KG76_BACHD | Q9KG76: 5t49 5t4a 5t4c 5t4g 5upm 5upn 5upo 5v1w
UniProtKB/TrEMBL
        Q9KG76_BACHD | Q9KG76: 1w9s 1w9t 1w9w

(-) Related Entries Specified in the PDB File

5upm 5upn 5upo