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(-) Description

Title :  CRYSTAL STRUCTURE OF SEMET DERIVATIVE BHGH81
 
Authors :  B. Pluvinage, A. B. Boraston
Date :  29 Aug 16  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  (Alpha/Beta)6 Barrel, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Pluvinage, A. Hettle, A. Fillo, K. Abe, P. Massel, D. Langelaan, S. P. Smith, A. B. Boraston
The Quaternary Structure Of Beta-1, 3-Glucan Contributes To Its Recognition And Hydrolysis By A Multimodular Family 81 Glycoside Hydrolase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BH0236 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BH0236
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 272558
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 34)

Asymmetric/Biological Unit (3, 34)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2MSE16Mod. Amino AcidSELENOMETHIONINE
3PO49Ligand/IonPHOSPHATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:465 , ASP A:466 , ALA A:529 , ASP A:530 , ASN A:540 , HOH A:968 , HOH A:1019 , HOH A:1133binding site for residue EDO A 801
02AC2SOFTWAREASP A:155 , ASN A:157 , TYR A:160 , ARG A:162 , THR A:175 , VAL A:269 , ARG A:270binding site for residue EDO A 802
03AC3SOFTWAREHIS A:120 , HIS A:129 , HIS A:131binding site for residue EDO A 803
04AC4SOFTWARETYR A:313 , GLY A:335 , THR A:336 , GLU A:591 , HOH A:908binding site for residue EDO A 804
05AC5SOFTWAREALA A:274 , ASP A:275 , TRP A:276 , ARG A:509 , HOH A:1094binding site for residue EDO A 805
06AC6SOFTWAREASP A:275 , THR A:277 , THR A:286 , THR A:288binding site for residue EDO A 806
07AC7SOFTWAREARG A:366 , MSE A:406 , ASP A:779binding site for residue EDO A 807
08AC8SOFTWARETYR A:111 , LYS A:249 , LEU A:250 , PRO A:251 , GLN A:298 , GLN A:329 , TYR A:330 , GLU A:331binding site for residue EDO A 808
09AC9SOFTWARESER A:357 , LEU A:358 , GLN A:710 , HIS A:713 , HOH A:1046binding site for residue EDO A 809
10AD1SOFTWAREGLU A:280 , GLU A:559 , ARG A:567 , HIS A:732 , PRO A:733 , HOH A:1009binding site for residue PO4 A 810
11AD2SOFTWAREGLU A:204 , HIS A:641 , PRO A:642 , ASP A:643 , TYR A:644 , HOH A:930binding site for residue PO4 A 811
12AD3SOFTWAREHIS A:315 , SER A:579 , ASN A:582 , GLU A:583 , HIS A:589 , HOH A:949 , HOH A:950binding site for residue PO4 A 812
13AD4SOFTWAREASP A:201 , TRP A:203 , SER A:213 , HIS A:217 , HIS A:219 , LYS A:253 , HOH A:931binding site for residue PO4 A 813
14AD5SOFTWAREASP A:365 , ARG A:368 , GLU A:685 , TYR A:712 , HIS A:716binding site for residue PO4 A 814
15AD6SOFTWAREALA A:113 , PRO A:114 , HIS A:115binding site for residue PO4 A 815
16AD7SOFTWAREGLU A:124binding site for residue PO4 A 816
17AD8SOFTWAREHIS A:170 , ASP A:189 , HOH A:943binding site for residue PO4 A 817
18AD9SOFTWAREMSE A:578 , ASN A:582 , HIS A:640 , HIS A:641 , HOH A:950 , HOH A:994 , HOH A:1033 , HOH A:1101binding site for residue PO4 A 818

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T49)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1His A:96 -Pro A:97
2Tyr A:454 -His A:455
3Leu A:629 -Pro A:630

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T49)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T49)

(-) Exons   (0, 0)

(no "Exon" information available for 5T49)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:752
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee............hhhhhhh........................hhhhhh...........eeee....eeee..hhhhheeeee....eeeee......eeeee.......eeeeeee...eeeeeeee..eeeeeeee....eeeeeee...eeee.....eeeee...eeeee.....eeeee.............eeee...eeeeee....hhhhhhhhhhhh.eeeeeeeeeeeee....eeeeeeeeeeee........eeeeehhhhhhhhhhhhhh.eeeeeeeee..eeeeeeee.eeeeeee..............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.............eeeee....eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh................................ee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..................eee..eeee........hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhee..........eeeeee..eeeeeeee.....eeee.....eeee...ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t49 A  28 HAVSVGKGSYATEFPEIDFGGINDPGFRDQQGEPPATIYRSDRVTGPmQTNSWWGSLAVDRFSmNQYPHPFSVRHRAEGLHVFYDAPHNmVVHENREAGTWHIHGAIGTDFTIKHSGTANFEQAVVDDYNDWYVRGLLENGAHQmAITYGVGSPYIFVEYEDGSAVLDFDIAPDVWEmNGHVIGFSTHDHKHYAAFAPPGQNWSGIGSKTLTNNADYIAIAKLPEKDGNmLAKFEQYAYSVVRDAVADWTYDEATGTVTTTFEVTTEAKVQGAPDGTIFALYPHQYRHLASSSENQLLQNYQYEIIRGTmIGLEGKRFTTELTYPGVLPSLPDLGDYDRERLIGYLHDATSDYPTGSDTYELGKYIGKLATLAPIADQmGEYELAEQFRGELKDILEDWLQATNASGQLKGKNLFYYNENWGTILGYHAAHSSATRINDHHFHYGYFVKAAAEIARADQEWAKSENWGGmIDLLIRDFmADRDDDLFPYLRmFDPYSGNSWADGLATFDAGNNQESSSEAmHAWTNVILWAEATGNKALRDRAIYLYTTEmSAINEYFFDVHQEIFPEEYGPEIVTINWGGKmDHATWWNSGKVEKYAINWLPFHGGSLYLGHHPDYVDRAYEELRRDIGSTDWNLWSNLVWmYRAFTNPDDALQQmEASIDDYGLFDPGNEKIIERGSTKAQTYHWIHNLAELGRVDPTVTANHPIYAVFNKNGNRTYIVYNFSDSPITVQFSDGHSIQVEPHSFNIGNGD 779
                                    37        47        57        67       |77        87   |    97       107       117       127       137       147       157       167    |  177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517 |     527       537       547|      557       567       577|      587       597       607  |    617       627       637       647       657       667  |    677      |687       697       707       717       727       737       747       757       767       777  
                                                                          75-MSE          91-MSE                   117-MSE                                                172-MSE                          205-MSE                                             257-MSE                                                                         337-MSE                                                              406-MSE                                                                                    497-MSE  506-MSE      519-MSE                      548-MSE                       578-MSE                         610-MSE                                                     670-MSE       684-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T49)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T49)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T49)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  5t49
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  Q9KG76_BACHD | Q9KG76
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9KG76_BACHD | Q9KG76: 5t4a 5t4c 5t4g 5upi 5upm 5upn 5upo 5v1w
UniProtKB/TrEMBL
        Q9KG76_BACHD | Q9KG76: 1w9s 1w9t 1w9w

(-) Related Entries Specified in the PDB File

5t4a 5t4c 5t4g