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(-) Description

Title :  CRYSTAL STRUCTURE OF CREBBP BROMODOMAIN COMPLEXED WITH CBP015
 
Authors :  J. Zhu, D. Spiliotopoulos, A. Caflisch
Date :  20 Dec 16  (Deposition) - 19 Apr 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Crebbp Bromodomain, Inhibitor, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Spiliotopoulos, J. Zhu, E. C. Wamhoff, N. Deerain, J. R. Marchand, J. Aretz, C. Rademacher, A. Caflisch
Virtual Screen To Nmr (Vs2Nmr): Discovery Of Fragment Hits For The Cbp Bromodomain.
Bioorg. Med. Chem. Lett. V. 27 2472 2017
PubMed-ID: 28410781  |  Reference-DOI: 10.1016/J.BMCL.2017.04.001

(-) Compounds

Molecule 1 - CREB-BINDING PROTEIN
    Chains: A, B
    EC Number: 2.3.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: CREBBP, CBP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1F312Ligand/Ion1-(4-AZANYL-3-METHOXY-PHENYL)ETHANONE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1F311Ligand/Ion1-(4-AZANYL-3-METHOXY-PHENYL)ETHANONE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1F311Ligand/Ion1-(4-AZANYL-3-METHOXY-PHENYL)ETHANONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1110 , VAL A:1115 , LEU A:1120 , ILE A:1122 , ASN A:1168 , VAL A:1174 , HOH A:1314 , HOH A:1315 , HOH A:1396binding site for residue F31 A 1201
2AC2SOFTWAREARG A:1112 , HOH A:1402 , VAL B:1115 , LEU B:1120 , ASN B:1168 , HOH B:1321 , HOH B:1334 , HOH B:1336 , HOH B:1355binding site for residue F31 B 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MQG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asp A:1105 -Pro A:1106
2Asp B:1105 -Pro B:1106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MQG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MQG)

(-) Exons   (0, 0)

(no "Exon" information available for 5MQG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....hhhhh...hhhhhh..hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                5mqg A 1082 KKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLG 1197
                                  1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      


Chain B from PDB  Type:PROTEIN  Length:113
                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh....hhhhh...........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                5mqg B 1084 IFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 1196
                                  1093      1103      1113      1123      1133      1143      1153      1163      1173      1183      1193
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MQG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MQG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MQG)

(-) Gene Ontology  (66, 66)

Asymmetric Unit(hide GO term definitions)

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  5mqg
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  CBP_HUMAN | Q92793
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  2.3.1.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBP_HUMAN | Q92793: 1jsp 1liq 1rdt 1wo3 1wo4 1wo5 1wo6 1wo7 1zoq 2d82 2kje 2kwf 2l84 2l85 2lxs 2lxt 2n1a 2rny 3dwy 3p1c 3p1d 3p1e 3p1f 3svh 4a9k 4n3w 4n4f 4nr4 4nr5 4nr6 4nr7 4nyv 4nyw 4nyx 4ouf 4tqn 4ts8 4whu 4yk0 5cgp 5dbm 5eic 5eng 5ep7 5gh9 5h85 5i83 5i86 5i89 5i8b 5i8g 5j0d 5jem 5ktu 5ktw 5ktx 5mpz 5mqe 5mqk 5tb6

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5MQG)