5LR6 - JenaLib

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Title :   CRYSTAL STRUCTURE OF COMT IN COMPLEX WITH [3-(2,4-DIMETHYL-1,3-THIAZOL-5-YL)-1H-PYRAZOL-5-YL]-(4-PHENYLPIPERAZIN-1-YL)METHANONE

Authors :   A. Ehler, C. Lerner, M. G. Rudolph

Date :   18 Aug 16 (Deposition) - 31 Aug 16 (Release) - 28 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Methyltransferase, Neurotransmitter Degradation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Lerner, M. G. Rudolph
Crystal Structure Of Comt In Complex With [3-(2, 4-Dimethyl-1, 3-Thiazol-5-Yl) -1H-Pyrazol-5-Yl]-(4-Phenylpiperazin-1-Yl)Methanone
To Be Published
PubMed: search

Molecule 1 - CATECHOL O-METHYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	SOLUBLE FORM, RESIDUES 44-264
	Gene	:	COMT
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	731	4	Ligand/Ion	[5-(2,4-DIMETHYL-1,3-THIAZOL-5-YL)-1~{H}-PYRAZOL-3-YL]-(4-PHENYLPIPERAZIN-1-YL)METHANONE
2	CL	4	Ligand/Ion	CHLORIDE ION
3	NHE	4	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	731	1	Ligand/Ion	[5-(2,4-DIMETHYL-1,3-THIAZOL-5-YL)-1~{H}-PYRAZOL-3-YL]-(4-PHENYLPIPERAZIN-1-YL)METHANONE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NHE	1	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	731	1	Ligand/Ion	[5-(2,4-DIMETHYL-1,3-THIAZOL-5-YL)-1~{H}-PYRAZOL-3-YL]-(4-PHENYLPIPERAZIN-1-YL)METHANONE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NHE	1	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	731	1	Ligand/Ion	[5-(2,4-DIMETHYL-1,3-THIAZOL-5-YL)-1~{H}-PYRAZOL-3-YL]-(4-PHENYLPIPERAZIN-1-YL)METHANONE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NHE	1	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	731	1	Ligand/Ion	[5-(2,4-DIMETHYL-1,3-THIAZOL-5-YL)-1~{H}-PYRAZOL-3-YL]-(4-PHENYLPIPERAZIN-1-YL)METHANONE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NHE	1	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:40 , GLY A:66 , TYR A:68 , MET A:89 , GLU A:90 , ILE A:91 , GLY A:117 , ALA A:118 , SER A:119 , GLN A:120 , HIS A:142 , TRP A:143 , ARG A:146	binding site for residue 731 A 301
2	AC2	SOFTWARE	TRP A:143 , LYS A:144 , ASP A:145 , HOH A:419 , LYS C:5 , GLU C:6 , ASN C:92 , 731 C:502	binding site for residue NHE A 302
3	AC3	SOFTWARE	GLY B:66 , TYR B:68 , MET B:89 , GLU B:90 , ILE B:91 , GLY B:117 , ALA B:118 , SER B:119 , HIS B:142 , TRP B:143 , 731 D:301 , NHE D:302	binding site for residue 731 B 301
4	AC4	SOFTWARE	LYS B:144 , ASP B:145 , HOH B:404 , LYS D:5 , GLU D:6 , TRP D:38 , 731 D:301	binding site for residue NHE B 302
5	AC5	SOFTWARE	LYS A:5 , GLU A:6 , ASN A:92 , HOH A:428 , TRP C:143 , LYS C:144 , ASP C:145	binding site for residue NHE C 501
6	AC6	SOFTWARE	NHE A:302 , GLY C:66 , TYR C:68 , GLU C:90 , ILE C:91 , GLY C:117 , ALA C:118 , SER C:119 , GLN C:120 , HIS C:142 , TRP C:143 , ARG C:146 , HOH C:613 , HOH C:629	binding site for residue 731 C 502
7	AC7	SOFTWARE	GLN C:120	binding site for residue CL C 503
8	AC8	SOFTWARE	731 B:301 , NHE B:302 , MET D:40 , ASN D:41 , GLY D:66 , TYR D:68 , MET D:89 , GLU D:90 , ILE D:91 , GLY D:117 , ALA D:118 , SER D:119 , GLN D:120 , HIS D:142 , TRP D:143 , HOH D:436	binding site for residue 731 D 301
9	AC9	SOFTWARE	LYS B:5 , GLU B:6 , ASN B:92 , 731 B:301 , TRP D:143 , LYS D:144 , ASP D:145	binding site for residue NHE D 302

(no "SS Bond" information available for 5LR6)

Asymmetric Unit

No.	Residues
1	Val A:173	-	Pro A:174
2	Val B:173	-	Pro B:174
3	Val C:173	-	Pro C:174
4	Val D:173	-	Pro D:174

(no "SAP(SNP)/Variant" information available for 5LR6)

(no "PROSITE Motif" information available for 5LR6)

(no "Exon" information available for 5LR6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeee....hhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhh....eeeee.hhhhhh.hhhhhhh...eeeeee..hhhhhhhhhhhhhhh..eeeeeeeee.......hhhhhhhhhhh..eeeeeeeee....eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lr6 A   2 GDTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLMKVVDGLEKAIYQGPS 216
                                    11        21        31        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192     ||204       214  
                                                                 40|                                                                                                                                                         198|               
                                                                  42                                                                                                                                                          201

Chain B from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..eeeee....hhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhh....eeeee.hhhhhh.hhhhhh....eeeeee..hhhhhhhhhhhhhhh..eeeeeeeeee......hhhhhhhhhhh..eeeeeeeeee....eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lr6 B   2 GDTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPS 216
                                    11        21        31      ||44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214  
                                                               38|                                                                                                                                                                              
                                                                42

Chain C from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhh....eeeee.hhhhhh.hhhhhh....eeeeee..hhhhhhhhhhhhhhh..eeeeeeeee.......hhhhhhhhhhh..eeeeeeeeee....eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lr6 C   3 DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWANVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPSS 217
                                    12        22        32      ||43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213    
                                                               39|                                                                                                                                                                                
                                                                41

Chain D from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh......eeeeee.hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhh........eeeeee..hhhhhhhhhhhhhhh..eeeeeeeee.......hhhhhhhhhhh..eeeeeeeee......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lr6 D   2 GDTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGP 215
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5LR6)

(no "CATH Domain" information available for 5LR6)

(no "Pfam Domain" information available for 5LR6)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Val A:173 - Pro A:174	[ RasMol ]
		Val B:173 - Pro B:174	[ RasMol ]
		Val C:173 - Pro C:174	[ RasMol ]
		Val D:173 - Pro D:174	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (42, 42)

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