5LQJ - JenaLib

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Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF COMT IN COMPLEX WITH 3-CYCLOPROPYL-5-METHYL-4-PHENYL-1,2,4-TRIAZOLE

Authors :   A. Ehler, C. Lerner, M. G. Rudolph

Date :   17 Aug 16 (Deposition) - 28 Sep 16 (Release) - 28 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.41

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B (1x),D (1x)
Biol. Unit 3: B (1x),D (1x)
Biol. Unit 4: C  (1x)

Keywords :   Methyltransferase, Neurotransmitter Degradation, Catechol, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Lerner, M. G. Rudolph
Crystal Structure Of Comt In Complex With 3-Cyclopropyl-5-Methyl-4-Phenyl-1, 2, 4-Triazole
To Be Published
PubMed: search

Molecule 1 - CATECHOL O-METHYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	SOLUBLE FORM, RESIDUES 44-264
	Gene	:	COMT
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B (1x)		D (1x)
Biological Unit 3 (1x)	:		B (1x)		D (1x)
Biological Unit 4 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 10)

No.	Name	Count	Type	Full Name
1	72N	5	Ligand/Ion	3-CYCLOPROPYL-5-METHYL-4-PHENYL-1,2,4-TRIAZOLE
2	CL	1	Ligand/Ion	CHLORIDE ION
3	K	1	Ligand/Ion	POTASSIUM ION
4	NA	3	Ligand/Ion	SODIUM ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	72N	1	Ligand/Ion	3-CYCLOPROPYL-5-METHYL-4-PHENYL-1,2,4-TRIAZOLE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	72N	1	Ligand/Ion	3-CYCLOPROPYL-5-METHYL-4-PHENYL-1,2,4-TRIAZOLE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	72N	1	Ligand/Ion	3-CYCLOPROPYL-5-METHYL-4-PHENYL-1,2,4-TRIAZOLE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	72N	2	Ligand/Ion	3-CYCLOPROPYL-5-METHYL-4-PHENYL-1,2,4-TRIAZOLE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL A:183 , ARG A:184 , SER A:186 , PHE A:189 , HOH A:429	binding site for residue NA A 301
02	AC2	SOFTWARE	ALA A:181 , TYR A:182 , TYR C:200 , ASP D:178 , TYR D:182	binding site for residue 72N A 302
03	AC3	SOFTWARE	VAL B:183 , ARG B:184 , SER B:186 , PHE B:189 , HOH B:425	binding site for residue NA B 301
04	AC4	SOFTWARE	LEU B:61 , VAL B:62 , ARG B:85 , LEU B:87 , THR B:113 , TYR B:130 , ASP B:131 , VAL B:132 , LEU B:135	binding site for residue 72N B 302
05	AC5	SOFTWARE	TYR B:68 , CYS B:69 , GLY B:70 , TYR B:71 , SER B:72	binding site for residue CL B 303
06	AC6	SOFTWARE	VAL C:183 , ARG C:184 , SER C:186 , PHE C:189 , HOH C:428	binding site for residue NA C 301
07	AC7	SOFTWARE	TYR A:200 , LEU B:148 , ASP B:178 , TYR B:182 , ALA C:181 , TYR C:182	binding site for residue 72N C 302
08	AC8	SOFTWARE	VAL A:204 , ARG C:184 , HIS C:193 , SER C:195 , HOH C:401 , HOH C:405	binding site for residue 72N C 303
09	AC9	SOFTWARE	VAL D:183 , ARG D:184 , SER D:186 , PHE D:189 , HOH D:427	binding site for residue K D 301
10	AD1	SOFTWARE	VAL D:62 , ARG D:85 , LEU D:87 , THR D:113 , TYR D:130 , VAL D:132	binding site for residue 72N D 302

(no "SS Bond" information available for 5LQJ)

Asymmetric Unit

No.	Residues
1	Val A:173	-	Pro A:174
2	Val B:173	-	Pro B:174
3	Val C:173	-	Pro C:174
4	Val D:173	-	Pro D:174

(no "SAP(SNP)/Variant" information available for 5LQJ)

(no "PROSITE Motif" information available for 5LQJ)

(no "Exon" information available for 5LQJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhh....eeeee.hhhhhh.hhhhhhh.....eeee..hhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhh..eeeeeeeee......eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lqj A   3 DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPS 216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212

Chain B from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhh....eeeee.hhhhhh.hhhhhhh.....eeee..hhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhh.............................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lqj B   3 DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPS 216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212

Chain C from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhhhhh.eeeee.hhhhhh.hhhhhhh.....eeee..hhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhh..eeeeeeeeee....eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lqj C   3 DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGP 215
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212

Chain D from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhhhh.eeee..hhhhhh..hhhhhh...eeeeee..hhhhhhhhhhhhhhh..eeeeeeeee.......hhhhhhhhhhh.............................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lqj D   3 DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPS 216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5LQJ)

(no "CATH Domain" information available for 5LQJ)

(no "Pfam Domain" information available for 5LQJ)

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
		72N	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		K	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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		AD1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Val A:173 - Pro A:174	[ RasMol ]
		Val B:173 - Pro B:174	[ RasMol ]
		Val C:173 - Pro C:174	[ RasMol ]
		Val D:173 - Pro D:174	[ RasMol ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 10)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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SAPs(SNPs)/Variants (0, 0)

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