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(-) Description

Title :  STRUCTURE OF THE LEGIONELLA EFFECTOR, ANKB, IN COMPLEX WITH HUMAN SKP1
 
Authors :  K. Wong, G. Kozlov, K. Gehring, Montreal-Kingston Bacterial Struct Genomics Initiative (Bsgi)
Date :  19 May 16  (Deposition) - 25 Jan 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Bacterial Effector, Host-Pathogen Interaction, F-Box Protein, Ankyrin Repeats, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Wong, J. D. Perpich, G. Kozlov, M. Cygler, Y. Abu Kwaik, K. Gehring
Structural Mimicry By A Bacterial F Box Effector Hijacks Th Host Ubiquitin-Proteasome System.
Structure V. 25 376 2017
PubMed-ID: 28111017  |  Reference-DOI: 10.1016/J.STR.2016.12.015

(-) Compounds

Molecule 1 - ANKYRIN-REPEAT PROTEIN B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: ANKB
    Organism Scientific: LEGIONELLA PNEUMOPHILA
    Organism Taxid: 446
 
Molecule 2 - S-PHASE KINASE-ASSOCIATED PROTEIN 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: SKP1, EMC19, OCP2, SKP1A, TCEB1L
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CYCLIN-A/CDK2-ASSOCIATED PROTEIN P19,P19A,ORGAN OF CORTI PROTEIN 2,OCP-2,ORGAN OF CORTI PROTEIN II,OCP-II,RNA POLYMERASE II ELONGATION FACTOR-LIKE PROTEIN,SIII,TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1-LIKE,P19SKP1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5K35)

(-) Sites  (0, 0)

(no "Site" information available for 5K35)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K35)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K35)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K35)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K35)

(-) Exons   (0, 0)

(no "Exon" information available for 5K35)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhhh............hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k35 A   2 KKNFFSDLPEETIVNTLSFLKANTLARIAQTCQFFNRLANDKHLELHQLRQQHIKRELWGNLMVAARSNNLEEVKKILKKGIDPTQTNSYHLNRTPLLAAIEGKAYQTANYLWRKYTFDPNFKDNYGDSPISLLKKQLANPAFKDKEKKQIRALIRGMQEEKIA 165
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    


Chain B from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeeehhhhh.hhhhhhhhhh.......ee....hhhhhhhhhhhhhhhh..........hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k35 B   2 PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDDPVPLPNVNAAILKKVIQWCTHHKDDPEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 160
                                    11        21        31     || 45        55        65   ||   84        94       104       114       124       134       144       154      
                                                              37|                         69|                                                                                 
                                                               42                          79
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K35)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K35)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K35)

(-) Gene Ontology  (27, 27)

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  SKP1_HUMAN | P63208
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SKP1_HUMAN | P63208: 1fqv 1fs1 1fs2 1ldk 1p22 2ass 2ast 2e31 2e32 2ovp 2ovq 2ovr 3l2o 3wso 4i6j 5ibk 5jh5
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        Q5ZTL7_LEGPH | Q5ZTL7: 5k34

(-) Related Entries Specified in the PDB File

5k34 RELATED ID: MCSG-APC40624 RELATED DB: TARGETTRACK