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(-) Description

Title :  THE IDENTIFICATION AND PHARMACOLOGICAL CHARACTERIZATION OF 6-(TERT-BUTYLSULFONYL)-N-(5-FLUORO-1H-INDAZOL-3-YL)QUINOLIN-4-AMINE (GSK583), A HIGHLY POTENT AND SELECTIVE INHIBITOR OF RIP2 KINASE, COMPOUND 3 COMPLEX
 
Authors :  M. A. Convery, L. N. Casillas, P. A. Haile, B. J. Votta, A. S. Lakdawala
Date :  06 Apr 16  (Deposition) - 18 May 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase Domain, Kinase Inhibitor, Structure-Based Drug Design, Inhibitor Selectivity, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. A. Haile, B. J. Votta, R. W. Marquis, M. J. Bury, J. F. Mehlmann, R. Singhaus, A. K. Charnley, A. S. Lakdawala, M. A. Convery, D. B. Lipshutz, B. M. Desai, B. Swift, C. A. Capriotti, S. B. Berger, M. K. Mahajan, M. A. Reilly, E. J. Rivera, H. H. Sun, R. Nagilla, A. M. Beal, J. N. Finger, M. N. Cook, B. W. King, M. T. Ouellette, R. D. Totoritis, M. Pierdomenico, A. Negroni, L. Stronati, S. Cucchiara, B. Ziokowski, A. Vossenkamper, T. T. Macdonald, P. J. Gough, J. Bertin, L. N. Casillas
The Identification And Pharmacological Characterization Of 6-(Tert-Butylsulfonyl)-N-(5-Fluoro-1H-Indazol-3-Yl) Quinolin-4-Amine (Gsk583), A Highly Potent And Selective Inhibitor Of Rip2 Kinase.
J. Med. Chem. V. 59 4867 2016
PubMed-ID: 27109867  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00211

(-) Compounds

Molecule 1 - RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2
    Chains: A, B
    EC Number: 2.7.11.1, 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 1-310
    Gene: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- ASSOCIATED KINASE,CARD-CONTAINING IL-1 BETA ICE-KINASE,RIP-LIKE- INTERACTING CLARP KINASE,RECEPTOR-INTERACTING PROTEIN 2,RIP-2, TYROSINE-PROTEIN KINASE RIPK2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
16GE2Ligand/Ion4-METHYL-3-{[6-(METHYLSULFONYL)QUINOLIN-4-YL]AMINO}PHENOL
2SO45Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:25 , ALA A:45 , LYS A:47 , GLU A:66 , LEU A:79 , THR A:95 , GLU A:96 , MET A:98 , LEU A:153 , ASP A:164 , HOH A:560binding site for residue 6GE A 401
2AC2SOFTWARELYS A:110 , PRO A:114 , ARG A:225 , HOH A:550binding site for residue SO4 A 402
3AC3SOFTWAREARG A:109 , LYS A:110 , THR A:111 , GLU A:112 , HOH A:562binding site for residue SO4 A 403
4AC4SOFTWARESER B:25 , VAL B:32 , ALA B:45 , LYS B:47 , GLU B:66 , THR B:95 , GLU B:96 , MET B:98 , LEU B:153 , ASP B:164 , HOH B:532binding site for residue 6GE B 401
5AC5SOFTWAREHIS B:136 , SER B:282 , PHE B:283 , HOH B:501 , HOH B:541 , HOH B:560 , HOH B:573binding site for residue SO4 B 402
6AC6SOFTWARETHR A:189 , ILE A:190 , HOH A:511 , ASN B:234 , LEU B:236 , HOH B:504 , HOH B:578binding site for residue SO4 B 403
7AC7SOFTWARELYS B:110 , PRO B:114 , ARG B:225 , HOH B:506binding site for residue SO4 B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J79)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:139 -Pro A:140
2Thr B:139 -Pro B:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J79)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J79)

(-) Exons   (0, 0)

(no "Exon" information available for 5J79)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee....hhh.eeeeeeeee....eeeeeee.....eeeeee..hhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh...ee....hhh.eee.....eee......ee........hhhhhhhhhh....hhhhhhhhhhhhhhhhh........hhhhhhhhhhhh...............hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j79 A   2 NGEAICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLRKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMSAPEGGTIIYMPPENYEPSIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMYSVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVLRTFEEITFLEAVIQLK 310
                                    11        21        31        41       |61        71        81        91       101       111       121       131       141       151       161       171||     191       207       217       227       237       247       257       267       277       287       297       307   
                                                                          49|                                                                                                             172|              200|                                                                                                       
                                                                           60                                                                                                              183               207                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhh.eeeeeeeeee..eeeeeeee.....eeeeee..hhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....ee....hhh.eee.....eee......ee........hhhhh......hhhhhhhhhhhhhhhhh........hhhhhhhhhhh................hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j79 B   5 AICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLRKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMGTIIYMPPENYEPGQSIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMYSVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVLRTFEEITFLEAVIQLK 310
                                    14        24        34        44    ||  64        74        84        94       104       114       124       134       144       154       164       189       199  ||   213       223       233       243       253       263       273       283       293       303       
                                                                       49|                                                                                                             172|           202|                                                                                                       
                                                                        60                                                                                                              188            207
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J79)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J79)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J79)

(-) Gene Ontology  (74, 74)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Thr A:139 - Pro A:140   [ RasMol ]  
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  5j79
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIPK2_HUMAN | O43353: 2n7z 2n83 4c8b 5ar2 5ar3 5ar4 5ar5 5ar7 5ar8 5j7b 5ng0 5ng2 5ng3

(-) Related Entries Specified in the PDB File

5j7b