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(-) Description

Title :  STRUCTURE OF RIP2K(L294F) WITH BOUND AMPPCP
 
Authors :  E. Pellegrini, S. Cusack
Date :  16 Mar 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rip2K, Kinase, Active State, Amppcpp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Pellegrini, L. Signor, S. Singh, E. B. Erba, S. Cusack
Structural Analysis Of The Active And Inactive States Of Rip2 Kinase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2
    Chains: A, B
    EC Number: 2.7.11.1, 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- ASSOCIATED KINASE,CARD-CONTAINING IL-1 BETA ICE-KINASE,RIP-LIKE- INTERACTING CLARP KINASE,RECEPTOR-INTERACTING PROTEIN 2,RIP-2, TYROSINE-PROTEIN KINASE RIPK2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ACP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2CO1Ligand/IonCOBALT (II) ION
3MG2Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:29 , VAL A:32 , ALA A:45 , LYS A:47 , LEU A:79 , THR A:95 , GLU A:96 , MET A:98 , GLN A:150 , ASN A:151 , LEU A:153 , ASP A:164 , MG A:1001 , HOH A:1104 , HOH A:1114 , HOH A:1141 , HOH A:1231 , HOH A:1234 , HOH A:1238binding site for residue ACP A 1000
2AC2SOFTWAREASP A:164 , ACP A:1000 , HOH A:1153 , HOH A:1259binding site for residue MG A 1001
3AC3SOFTWARESER B:29 , VAL B:32 , ALA B:45 , LYS B:47 , LEU B:79 , THR B:95 , GLU B:96 , MET B:98 , GLN B:150 , ASN B:151 , LEU B:153 , ASP B:164 , MG B:402 , HOH B:514 , HOH B:517 , HOH B:622 , HOH B:625binding site for residue ACP B 401
4AC4SOFTWAREASP B:164 , ACP B:401 , HOH B:511 , HOH B:647binding site for residue MG B 402

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:7 -B:7

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:139 -Pro A:140
2Thr B:139 -Pro B:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NG0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NG0)

(-) Exons   (0, 0)

(no "Exon" information available for 5NG0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....hhh.eeeeeeeee....eeeeeee.....eeeeee.......hhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....ee....hhh.eee.....eee......ee........hhhhh....hhhhhhhhhhhhhhhhh........hhhhhhhhhhh................hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ng0 A   6 ICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLLDSERKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMGTIIYMPPENYEPSIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMYSVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVFRTFEEI 300
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165      |190       200|      216       226       236       246       256       266       276       286       296    
                                                                                                                                                                                                172|         200|                                                                                             
                                                                                                                                                                                                 188          207                                                                                             


Chain B from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee....hhh.eeeeeeeee....eeeeeee.....eeeeee.......hhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....ee....hhh.eee.....eee......ee........hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh................hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ng0 B   5 AICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLLDSERKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMSAPEGGTIIYMPPENYEPGRASIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMYSVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVFRTFEE 299
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       184       194      |207       217       227       237       247       257       267       277       287       297  
                                                                                                                                                                                                 172|               201|                                                                                              
                                                                                                                                                                                                  183                205
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NG0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NG0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NG0)

(-) Gene Ontology  (74, 74)

Asymmetric/Biological Unit(hide GO term definitions)

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  5ng0
    Family and Domain Information: ProDom | SYSTERS
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  RIPK2_HUMAN | O43353
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIPK2_HUMAN | O43353: 2n7z 2n83 4c8b 5ar2 5ar3 5ar4 5ar5 5ar7 5ar8 5j79 5j7b 5ng2 5ng3

(-) Related Entries Specified in the PDB File

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