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(-) Description

Title :  STRUCTURE OF RIP2K(D146N) WITH BOUND STAUROSPORINE
 
Authors :  E. Pellegrini, S. Cusack
Date :  16 Mar 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rip2K, Kinase, Inactive State, Staurosporine, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Pellegrini, L. Signor, S. Singh, E. B. Erba, S. Cusack
Structural Analysis Of The Active And Inactive States Of Rip2 Kinase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2
    Chains: A, B
    EC Number: 2.7.11.1, 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- ASSOCIATED KINASE,CARD-CONTAINING IL-1 BETA ICE-KINASE,RIP-LIKE- INTERACTING CLARP KINASE,RECEPTOR-INTERACTING PROTEIN 2,RIP-2, TYROSINE-PROTEIN KINASE RIPK2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1PO46Ligand/IonPHOSPHATE ION
2STU2Ligand/IonSTAUROSPORINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:25 , VAL A:32 , ALA A:45 , THR A:95 , GLU A:96 , TYR A:97 , MET A:98 , SER A:102 , GLN A:150 , LEU A:153binding site for residue STU A 401
2AC2SOFTWAREPRO A:14 , GLU A:87 , SER A:267 , GLU A:270 , SER A:271binding site for residue PO4 A 402
3AC3SOFTWARETYR A:113 , ASP A:115 , LEU A:120 , PHE A:158binding site for residue PO4 A 403
4AC4SOFTWAREVAL A:116 , TRP A:118binding site for residue PO4 A 404
5AC5SOFTWARESER B:25 , VAL B:32 , ALA B:45 , LYS B:47 , THR B:95 , GLU B:96 , TYR B:97 , MET B:98 , GLN B:150 , ASN B:151 , LEU B:153binding site for residue STU B 401
6AC6SOFTWAREPRO B:14 , GLU B:87 , SER B:267 , GLU B:270 , SER B:271binding site for residue PO4 B 402
7AC7SOFTWAREASP A:155 , ASP B:155 , LYS B:161binding site for residue PO4 B 403
8AC8SOFTWARETHR B:12 , ILE B:13 , PRO B:14 , HIS B:37 , ASP B:39 , TRP B:40binding site for residue PO4 B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NG2)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:139 -Pro A:140
2Thr B:139 -Pro B:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NG2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NG2)

(-) Exons   (0, 0)

(no "Exon" information available for 5NG2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhh.eeeeeeeee....eeeeeee.....eeeeee.......hhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....ee........eee.....eee......ee.........hhhhh....hhhhhhhhhhhhhhhhh........hhhhhhhhhhh................hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ng2 A   5 AICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLLDSERKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMTPPLLHHNLKTQNILLDNEFHVKIADFGLSKWRMMGTIIYMPPENYEPSIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMYSVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVLRTFE 298
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       188       198 ||    214       224       234       244       254       264       274       284       294    
                                                                                                                                                                                                  173|         200|                                                                                           
                                                                                                                                                                                                   188          207                                                                                           


Chain B from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhh.eeeeeeeee....eeeeeee.....eeeeee.......hhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....ee........eee.....eee......ee........hhhhh....hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh................hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ng2 B   5 AICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLLDSERKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMTPPLLHHNLKTQNILLDNEFHVKIADFGLSKWRMGTIIYMPPENYEPQKSRASIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMYSVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVLRTFE 298
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       189       199||     210       220       230       240       250       260       270       280       290        
                                                                                                                                                                                                 172|         200|                                                                                                
                                                                                                                                                                                                  188          202
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NG2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NG2)

(-) Gene Ontology  (74, 74)

Asymmetric/Biological Unit(hide GO term definitions)

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    Thr A:139 - Pro A:140   [ RasMol ]  
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  5ng2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIPK2_HUMAN | O43353: 2n7z 2n83 4c8b 5ar2 5ar3 5ar4 5ar5 5ar7 5ar8 5j79 5j7b 5ng0 5ng3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5NG2)