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(-) Description

Title :  RIP2 KINASE CATALYTIC DOMAIN (1 - 310)
 
Authors :  A. K. Charnley, M. A. Convery, A. Lakdawala Shah, E. Jones, P. Hardwick A. Bridges, B. J. Votta, P. J. Gough, R. W. Marquis, J. Bertin, L. Casill
Date :  23 Sep 15  (Deposition) - 21 Oct 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Keywords :  Transferase, Kinase Domain, Kinase Inhibitor, Structure-Based Drug Design, Inhibitor Selectivity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Charnley, M. A. Convery, A. Lakdawala Shah, E. Jones, P. Hardwicke, A. Bridges, M. Ouellette, R. Totoritis, B. Schwartz, B. W. King, D. D. Wisnoski, J. Kang, P. M. Eidam, B. J. Votta, P. J. Gough, R. W. Marquis, J. Bertin, L. Casillas
Crystal Structures Of Human Rip2 Kinase Catalytic Domain Complexed With Atp-Competitive Inhibitors: Foundations For Understanding Inhibitor Selectivity.
Bioorg. Med. Chem. V. 23 7000 2015
PubMed-ID: 26455654  |  Reference-DOI: 10.1016/J.BMC.2015.09.038

(-) Compounds

Molecule 1 - RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN, UNP RESIDUES 1-310
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- ASSOCIATED KINASE, CARD-CONTAINING IL-1 BETA ICE-KINASE, RIP-LIKE- INTERACTING CLARP KINASE, RECEPTOR-INTERACTING PROTEIN 2, RIP-2, TYROSINE-PROTEIN KINASE RIPK2, RECEPTOR-INTERACTING SERINE THREONINE- PROTEIN KINASE 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU B:112 , HOH B:2078 , HOH B:2079 , HOH B:2080 , HOH B:2164 , HOH B:2165 , HOH B:2166BINDING SITE FOR RESIDUE CA B1311

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AR2)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:139 -Pro A:140
2Thr B:139 -Pro B:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AR2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AR2)

(-) Exons   (0, 0)

(no "Exon" information available for 5AR2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....hhh.eeeeeeee.eeeeeee.....eeeeee...hhhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....ee....hhh.eee.....eee......ee.........hhhhh....hhhhhhhhhhhhhhhhh........hhhhhhhhhhh................hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ar2 A   4 EAICSALPTIPYHKLADLRYLSGTVSSARHADWRVQVAVKHLLDSERKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMGGTIIYMPPENYEPSIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMYSVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVLRTFEEITFLEAVIQLK 310
                                    13        23 ||     37        47||      63        73        83        93       103       113       123       133       143       153       163       187       197  ||   213       223       233       243       253       263       273       283       293       303       
                                                25|                48|                                                                                                                  172|          200|                                                                                                       
                                                 30                 55                                                                                                                   187           207                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....hhh.eeeeeeee..eeeeeee.....eeeeee...hhhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....ee....hhh.eee.....eee......ee............hhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhhhhh................hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ar2 B   4 EAICSALPTIPYHKLADLRYLSRGTVSSARHADWRVQVAVKHLHDSERKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMAPEGGTIIYMPPENYEPGQKSSIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMYSVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVLRTFEEITFLEAVIQLK 310
                                    13        23  ||    36        46   ||   62        72        82        92       102       112       122       132       142       152       162       172|      193       203||     215       225       235       245       255       265       275       285       295       305     
                                                 26|                  50|                                                                                                                172|                 204|                                                                                                       
                                                  30                   57                                                                                                                 184                  207
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AR2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AR2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AR2)

(-) Gene Ontology  (74, 74)

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    Thr A:139 - Pro A:140   [ RasMol ]  
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  5ar2
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  RIPK2_HUMAN | O43353
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIPK2_HUMAN | O43353: 2n7z 2n83 4c8b 5ar3 5ar4 5ar5 5ar7 5ar8 5j79 5j7b 5ng0 5ng2 5ng3

(-) Related Entries Specified in the PDB File

5ar3 RIP2 KINASE CATALYTIC DOMAIN (1 - 310) COMPLEX WITH AMP-PCP
5ar4 RIP2 KINASE CATALYTIC DOMAIN (1 - 310) COMPLEX WITH SB -203580
5ar5 RIP2 KINASE CATALYTIC DOMAIN (1 - 310) COMPLEX WITH BENZIMIDAZOLE
5ar7 RIP2 KINASE CATALYTIC DOMAIN (1 - 310) COMPLEX WITH BIARYL UREA
5ar8 RIP2 KINASE CATALYTIC DOMAIN (1 - 310) COMPLEX WITH BIPHENYLSULFONAMIDE