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(-) Description

Title :  CRYSTAL STRUCTURE OF THE E. COLI TYPE 1 PILUS SUBUNIT FIMG (ENGINEERED VARIANT WITH SUBSTITUTIONS Q134E AND S138E; N-TERMINAL FIMG RESIDUES 1-12 TRUNCATED) IN COMPLEX WITH THE DONOR STRAND PEPTIDE DSF_T4R-T6R-D13N
 
Authors :  C. Giese, J. Eras, A. Kern, G. Capitani, R. Glockshuber
Date :  11 Mar 16  (Deposition) - 06 Jul 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Complex, Protein, Fimgt, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Giese, J. Eras, A. Kern, M. A. Scharer, G. Capitani, R. Glockshuber
Accelerating The Association Of The Most Stable Protein-Ligand Complex By More Than Two Orders Of Magnitude
Angew. Chem. Int. Ed. Engl. V. 55 9350 2016
PubMed-ID: 27351462  |  Reference-DOI: 10.1002/ANIE.201603652

(-) Compounds

Molecule 1 - PROTEIN FIMG
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FIMG, B4319, JW4282
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
 
Molecule 2 - PROTEIN FIMF
    Chains: B, D
    Engineered: YES
    Fragment: UNP RESIDUES 23-37
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CO5Ligand/IonCOBALT (II) ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2CO-1Ligand/IonCOBALT (II) ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CO-1Ligand/IonCOBALT (II) ION
3EDO-1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:26 , HOH A:322 , HOH A:408 , HIS C:114 , HOH C:369 , HOH C:387binding site for residue CO A 201
2AC2SOFTWARELEU A:27 , HIS A:45 , HOH A:321 , HOH A:421binding site for residue CO A 202
3AC3SOFTWAREHIS A:45 , HOH A:332 , HOH A:405 , ASP C:46 , HOH C:307binding site for residue CO A 203
4AC4SOFTWAREHIS A:114 , HOH A:390 , HOH A:404 , ASP C:26 , HOH C:327 , HOH C:409binding site for residue CO A 204
5AC5SOFTWARETYR A:31 , ARG B:12 , ASN B:13 , HOH B:203binding site for residue EDO B 101
6AC6SOFTWAREHOH A:338 , HIS C:45 , HOH C:305 , HOH C:330 , HOH C:414 , HOH C:430binding site for residue CO C 201
7AC7SOFTWAREALA C:13 , LYS C:14 , GLY C:57 , TYR C:143 , SER C:144binding site for residue 1PE C 202

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:16 -A:54
2C:16 -C:54

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IQO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IQO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IQO)

(-) Exons   (0, 0)

(no "Exon" information available for 5IQO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee...eeeeeeeeee.hhhh...ee...eeeeeeee.......eeeeeee........ee........eeeee...........eeeee.......eeeeeeeeeee.......eeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5iqo A  13 AKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIEAVIEITYTYS 144
                                    22        32        42        52        62        72        82        92       102       112       122       132       142  


Chain B from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 5iqo B   1 ADSRIRIRGYVRNNG  15
                                    10     


Chain C from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee...eeeeeeeeee.hhhh........eeeeeeee.......eeeeeee........ee........eeeee...........eeeee.......eeeeeeeeee........eeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5iqo C  13 AKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIEAVIEITYTYS 144
                                    22        32        42        52        62        72        82        92       102       112       122       132       142  


Chain D from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 5iqo D   1 ADSRIRIRGYVRNN  14
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IQO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IQO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IQO)

(-) Gene Ontology  (2, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FIMF_ECOLI | P08189: 2jmr 3bfq 3bfw 3bwu 3jwn 4j3o 4xob 5iqm 5iqn
        FIMG_ECOLI | P08190: 3bfq 3bfw 3jwn 4j3o 4xo9 4xoa 4xod 5iqm 5iqn

(-) Related Entries Specified in the PDB File

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