5IO2 - JenaLib

Title :   XANTHOMONAS CAMPESTRIS PEROXIREDOXIN Q - C48S MUTANT

Authors :   A. Perkins, D. Parsonage, K. J. Nelson, L. B. Poole, A. Karplus

Date :   08 Mar 16 (Deposition) - 21 Sep 16 (Release) - 19 Oct 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.20

Chains :   Asym./Biol. Unit : A

Keywords :   Prxq, Bcp, Peroxidase, Redox, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Perkins, D. Parsonage, K. J. Nelson, O. M. Ogba, P. H. Cheong, L. B. Poole, P. A. Karplus
Peroxiredoxin Catalysis At Atomic Resolution.
Structure V. 24 1668 2016
PubMed-ID: 27594682 | Reference-DOI: 10.1016/J.STR.2016.07.012

Compounds

Molecule 1 - BACTERIOFERRITIN COMIGRATORY PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	XCC1738
	Mutation	:	YES
	Organism Scientific	:	XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS (STRAIN ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
	Organism Taxid	:	190485
	Strain	:	ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25

Structural Features

Chains, Units

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 4)

Asymmetric/Biological Unit (3, 4)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	NA	2	Ligand/Ion	SODIUM ION
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:16 , SER A:18 , HOH A:377 , HOH A:395 , HOH A:474 , HOH A:477 , HOH A:489 , HOH A:500	binding site for residue NA A 201
2	AC2	SOFTWARE	HIS A:30 , HIS A:33 , LEU A:128 , SER A:129 , HOH A:464	binding site for residue NA A 202
3	AC3	SOFTWARE	THR A:45 , PRO A:46 , GLY A:47 , SER A:48 , ARG A:123 , HOH A:301 , HOH A:332 , HOH A:344	binding site for residue PO4 A 203

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh.ee.....ee.hhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh....eee...hhhhhhh..eeeeee..eeeeee..eeeee.....eeeee......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5io2 A   1 xTDAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGSTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAHAK 159
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
                            |                                                                                                                                                              
                            1-ACE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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	Sites
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	Cis Peptide Bonds
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Description