3GKM - JenaLib

Title :   INSIGHTS INTO THE ALKYL PEROXIDE REDUCTION ACTIVITY OF XANTHOMONAS CAMPESTRIS BACTERIOFERRITIN COMIGRATORY PROTEIN FROM THE TRAPPED INTERMEDIATE/LIGAND COMPLEX STRUCTURES

Authors :   S. -J. Liao

Date :   11 Mar 09 (Deposition) - 16 Jun 09 (Release) - 03 Nov 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.53

Chains :   Asym./Biol. Unit : A

Keywords :   Xanthomonas Campestris, Bcp, Prx, Atypical 2-Cys, Crystal Structure, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. -J. Liao, C. -Y. Yang, K. -H. Chin, A. H. -J. Wang, S. -H. Chou
Insights Into The Alkyl Peroxide Reduction Pathway Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped Intermediate-Ligand Complex Structures
J. Mol. Biol. V. 390 951 2009
PubMed-ID: 19477183 | Reference-DOI: 10.1016/J.JMB.2009.05.030
(for further references see the PDB file header)

Compounds

Molecule 1 - BACTERIOFERRITIN COMIGRATORY PROTEIN
	Chains	:	A
	EC Number	:	1.11.1.15
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BCP
	Mutation	:	YES
	Organism Scientific	:	XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
	Organism Taxid	:	340
	Strain	:	17

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA A:90 , HOH A:391	BINDING SITE FOR RESIDUE FMT A 408
02	AC2	SOFTWARE	VAL A:5 , LEU A:6 , ALA A:137 , ARG A:139 , HOH A:347	BINDING SITE FOR RESIDUE FMT A 409
03	AC3	SOFTWARE	SER A:18 , SER A:95 , GLY A:97 , HOH A:269 , FMT A:415	BINDING SITE FOR RESIDUE FMT A 410
04	AC4	SOFTWARE	PRO A:41 , LYS A:42 , THR A:45 , SER A:48 , ARG A:123 , HOH A:396	BINDING SITE FOR RESIDUE FMT A 411
05	AC5	SOFTWARE	ALA A:10 , HOH A:201 , FMT A:413	BINDING SITE FOR RESIDUE FMT A 412
06	AC6	SOFTWARE	PRO A:9 , ALA A:10 , HOH A:240 , FMT A:412	BINDING SITE FOR RESIDUE FMT A 413
07	AC7	SOFTWARE	ALA A:137 , HOH A:174 , HOH A:220 , HOH A:244 , HOH A:288 , HOH A:366	BINDING SITE FOR RESIDUE FMT A 414
08	AC8	SOFTWARE	SER A:76 , HOH A:165 , HOH A:297 , HOH A:394 , FMT A:410	BINDING SITE FOR RESIDUE FMT A 415
09	AC9	SOFTWARE	LEU A:6 , GLU A:7 , HOH A:320 , HOH A:331	BINDING SITE FOR RESIDUE FMT A 416
10	BC1	SOFTWARE	SER A:20 , PRO A:92 , HOH A:233 , HOH A:393	BINDING SITE FOR RESIDUE FMT A 417
11	BC2	SOFTWARE	ALA A:29 , HIS A:33 , HOH A:276	BINDING SITE FOR RESIDUE FMT A 418
12	BC3	SOFTWARE	GLU A:99 , LEU A:119 , GLY A:120 , HOH A:401	BINDING SITE FOR RESIDUE FMT A 419

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:157
 aligned with Q8P9V9_XANCP | Q8P9V9 from UniProtKB/TrEMBL  Length:160

    Alignment length:157
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       
         Q8P9V9_XANCP     3 DAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGCTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAHAK 159
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh.eee....ee.hhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh....eee...hhhhhhh..eeeeee..eeeeee..eeeee.....eeeeee.....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gkm A   3 DAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGSTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFSAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAHAK 159
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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