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(-) Description

Title :  XANTHOMONAS CAMPESTRIS PEROXIREDOXIN Q - STRUCTURE F6
 
Authors :  A. Perkins, D. Parsonage, K. J. Nelson, L. B. Poole, A. Karplus
Date :  07 Mar 16  (Deposition) - 21 Sep 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Prxq, Bcp, Peroxidase, Redox, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Perkins, D. Parsonage, K. J. Nelson, O. M. Ogba, P. H. Cheong, L. B. Poole, P. A. Karplus
Peroxiredoxin Catalysis At Atomic Resolution.
Structure V. 24 1668 2016
PubMed-ID: 27594682  |  Reference-DOI: 10.1016/J.STR.2016.07.012

(-) Compounds

Molecule 1 - BACTERIOFERRITIN COMIGRATORY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: XCC1738
    Organism Scientific: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS (STRAIN ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
    Organism Taxid: 190485
    Strain: ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2FMT1Ligand/IonFORMIC ACID
3NA2Ligand/IonSODIUM ION
4OCS1Mod. Amino AcidCYSTEINESULFONIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:30 , HIS A:33 , LEU A:128 , SER A:129 , HOH A:437binding site for residue NA A 201
2AC2SOFTWARESER A:44 , PHE A:83 , GLN A:87binding site for residue NA A 202
3AC3SOFTWAREALA A:11 , ASP A:14 , LYS A:116 , HOH A:352 , HOH A:369binding site for residue FMT A 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IMV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:65 -Gly A:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IMV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IMV)

(-) Exons   (0, 0)

(no "Exon" information available for 5IMV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh.ee.....ee.hhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh....eee...hhhhhhh..eeeeee..eeeeee..eeeee.....eeeeee.....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5imv A   1 xTDAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGcTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAHAK 159
                            |       10        20        30        40       |50        60        70        80        90       100       110       120       130       140       150         
                            |                                             48-OCS                                                                                                           
                            1-ACE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IMV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IMV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IMV)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:65 - Gly A:66   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8P9V9_XANCP | Q8P9V9: 3gkk 3gkm 3gkn 5im9 5ima 5imc 5imd 5imf 5imz 5iny 5io0 5io2 5iow 5iox 5ipg 5iph

(-) Related Entries Specified in the PDB File

5iiz 5im9 5ima 5imc 5imd 5imf 5imz 5iny 5io0 5io2