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(-) Description

Title :  XANTHOMONAS CAMPESTRIS PEROXIREDOXIN Q - STRUCTURE F1
 
Authors :  A. Perkins, D. Parsonage, K. J. Nelson, L. B. Poole, A. Karplus
Date :  05 Mar 16  (Deposition) - 21 Sep 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Prxq, Bcp, Peroxidase, Redox, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Perkins, D. Parsonage, K. J. Nelson, O. M. Ogba, P. H. Cheong, L. B. Poole, P. A. Karplus
Peroxiredoxin Catalysis At Atomic Resolution.
Structure V. 24 1668 2016
PubMed-ID: 27594682  |  Reference-DOI: 10.1016/J.STR.2016.07.012

(-) Compounds

Molecule 1 - BACTERIOFERRITIN COMIGRATORY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: XCC1738
    Organism Scientific: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS (STRAIN ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
    Organism Taxid: 190485
    Strain: ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
2NA5Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:22 , GLN A:24 , HOH A:432 , HOH A:473binding site for residue NA A 201
2AC2SOFTWARESER A:18 , HOH A:347 , HOH A:356 , HOH A:415 , HOH A:459 , HOH A:466binding site for residue NA A 202
3AC3SOFTWAREHIS A:30 , HIS A:33 , LEU A:128 , SER A:129 , HOH A:411binding site for residue NA A 203
4AC4SOFTWARESER A:18 , GLN A:24 , HOH A:475 , HOH A:503binding site for residue NA A 204
5AC5SOFTWAREALA A:137 , HOH A:379 , HOH A:416 , HOH A:443 , HOH A:478binding site for residue NA A 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IM9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IM9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IM9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IM9)

(-) Exons   (0, 0)

(no "Exon" information available for 5IM9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh.eee....ee.hhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh....eee...hhhhhhh..eeeeee..eeeeee..eeeee.....eeeeee.....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5im9 A   3 DAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGcTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAHAK 159
                                    12        22        32        42     |  52        62        72        82        92       102       112       122       132       142       152       
                                                                        48-CSO
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IM9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IM9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IM9)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8P9V9_XANCP | Q8P9V9: 3gkk 3gkm 3gkn 5ima 5imc 5imd 5imf 5imv 5imz 5iny 5io0 5io2 5iow 5iox 5ipg 5iph

(-) Related Entries Specified in the PDB File

3gkk WILD TYPE LOCALLY UNFOLDED DISULFIDE FORM
3gkm C48S/C84S FULLY FOLDED MUTANT
3gkn C48A MUTANT
5iiz
5ima
5imc
5imd
5imf
5imv
5imz