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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOTOINHIBITABLE INTERSECTIN1 CONTAINING C450M MUTANT LOV2 DOMAIN
 
Authors :  M. Tarnawski, O. Dagliyan, P. H. Chu, D. Shirvanyants, N. V. Dokholyan, I. Schlichting
Date :  02 Feb 16  (Deposition) - 21 Dec 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Signaling Protein, Photoswitch, Chimera (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Dagliyan, M. Tarnawski, P. H. Chu, D. Shirvanyants, I. Schlichting N. V. Dokholyan, K. M. Hahn
Engineering Extrinsic Disorder To Control Protein Activity In Living Cells.
Science V. 354 1441 2016
PubMed-ID: 27980211  |  Reference-DOI: 10.1126/SCIENCE.AAH3404

(-) Compounds

Molecule 1 - INTERSECTIN-1,NPH1-1,INTERSECTIN-1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ITSN1, ITSN, SH3D1A, NPH1-1
    Organism Common: HUMAN, OAT
    Organism Scientific: HOMO SAPIENS, AVENA SATIVA
    Organism Taxid: 9606, 4498
    Synonym: SH3 DOMAIN-CONTAINING PROTEIN 1A,SH3P17,SH3 DOMAIN- CONTAINING PROTEIN 1A,SH3P17

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:1323 , ASN A:1330 , ASN A:1354 , MET A:1355 , ARG A:1356 , LEU A:1358 , GLN A:1359 , VAL A:1368 , ILE A:1371 , ARG A:1372 , ILE A:1375 , LEU A:1385 , ASN A:1387 , ASN A:1397 , PHE A:1399 , PHE A:1414 , GLY A:1416 , GLN A:1418binding site for residue FMN A 1801
2AC2SOFTWARETHR B:1323 , ASN B:1330 , ASN B:1354 , MET B:1355 , ARG B:1356 , LEU B:1358 , GLN B:1359 , VAL B:1368 , ILE B:1371 , ARG B:1372 , ILE B:1375 , LEU B:1385 , ASN B:1387 , ASN B:1397 , PHE B:1399 , LEU B:1401 , PHE B:1414 , GLY B:1416 , GLN B:1418binding site for residue FMN B 1801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HZI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HZI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HZI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HZI)

(-) Exons   (0, 0)

(no "Exon" information available for 5HZI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:476
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...eeee........eeeehhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhh...eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.....................eeeeeeeee.....eeeeeee..eeeeeee..........eee....ee...eeee...eeeeee...eeeee..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hzi A 1231 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGELATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELKMPVKMIGDILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLSEQLVFNSVTNCLGPRKFLHSGKLYKAKSNKELYGFLFNDFLLLTQITVFSPKSNLQYKMYKTPIFLNEVLVKLPPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIETEKKK 1723
                                  1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490      1500      1510      1520      1530      1540      1550      1560      1570      1580      1590      1600      1610      1620      1630     |1650      1660      1670  ||  1687      1697      1707      1717      
                                                                                                                                                                                                                                                                                                                                                                                                                                              1636|                      1673|                                          
                                                                                                                                                                                                                                                                                                                                                                                                                                               1647                       1681                                          


Chain B from PDB  Type:PROTEIN  Length:476
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh....eeee........eeeehhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhh...eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.....................eeeeeeeee.....eeeeeee..eeeeeee..........eee....ee...eeee...eeeeee...eeeee..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hzi B 1231 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGELATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELKMPVKMIGDILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLSEQLVFNSVTNCLGPRKFLHSGKLYKAKSNKELYGFLFNDFLLLTQITVFSPKSNLQYKMYKTPIFLNEVLVKLPPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIETEKKK 1723
                                  1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490      1500      1510      1520      1530      1540      1550      1560      1570      1580      1590      1600      1610      1620      1630     |1650      1660      1670  ||  1687      1697      1707      1717      
                                                                                                                                                                                                                                                                                                                                                                                                                                              1636|                      1673|                                          
                                                                                                                                                                                                                                                                                                                                                                                                                                               1647                       1681
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HZI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HZI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HZI)

(-) Gene Ontology  (40, 40)

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  5hzi
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ITSN1_HUMAN | Q15811: 1ki1 2kgr 2khn 3fia 3qbv 4iim 5hzj 5hzk
UniProtKB/TrEMBL
        O49003_AVESA | O49003: 2v0u 2v0w 2v1a 2v1b 2wkp 2wkq 2wkr 4wf0 5efw 5hzh 5hzj 5hzk

(-) Related Entries Specified in the PDB File

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