5FY1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH N08619B

Authors :   R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, N. M. Pearce F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann

Date :   03 Mar 16 (Deposition) - 16 Mar 16 (Release) - 16 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.78

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Transferase, Pandda, Fragment Soaking, X-Ray Fragment Screening (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, N. M. Pearce, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Crystal Structure Of Jmjc Domain Of Human Histone Demethylase Uty In Complex With N08619B
To Be Published
PubMed: search

Molecule 1 - HISTONE DEMETHYLASE UTY
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Fragment	:	JMJC DOMAIN, RESIDUES 878-1347
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	UBIQUITOUSLY-TRANSCRIBED TPR PROTEIN ON THE Y CHROMOSOME, U BIQUITOUSLY-TRANSCRIBED Y CHROMOSOME TETRATRICOPEPTIDE REPEAT PROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 40)

No.	Name	Count	Type	Full Name
1	0R0	2	Ligand/Ion	2-HYDROXYBENZONITRILE
2	DMS	3	Ligand/Ion	DIMETHYL SULFOXIDE
3	EDO	31	Ligand/Ion	1,2-ETHANEDIOL
4	MN	2	Ligand/Ion	MANGANESE (II) ION
5	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 18)

No.	Name	Count	Type	Full Name
1	0R0	2	Ligand/Ion	2-HYDROXYBENZONITRILE
2	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
3	EDO	14	Ligand/Ion	1,2-ETHANEDIOL
4	MN	-1	Ligand/Ion	MANGANESE (II) ION
5	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 18)

No.	Name	Count	Type	Full Name
1	0R0	-1	Ligand/Ion	2-HYDROXYBENZONITRILE
2	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
3	EDO	17	Ligand/Ion	1,2-ETHANEDIOL
4	MN	-1	Ligand/Ion	MANGANESE (II) ION
5	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (40, 40)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:1278 , CYS A:1281 , CYS A:1305 , CYS A:1308	BINDING SITE FOR RESIDUE ZN A2345
02	AC2	SOFTWARE	CYS B:1278 , CYS B:1281 , CYS B:1305 , CYS B:1308	BINDING SITE FOR RESIDUE ZN B2352
03	AC3	SOFTWARE	HIS B:1093 , GLU B:1095 , HIS B:1173 , HOH B:2133 , HOH B:2142 , HOH B:2185	BINDING SITE FOR RESIDUE MN B2353
04	AC4	SOFTWARE	HIS A:1093 , GLU A:1095 , HIS A:1173 , HOH A:2148 , HOH A:2149 , HOH A:2156	BINDING SITE FOR RESIDUE MN A2346
05	AC5	SOFTWARE	MET A:944 , HIS A:976 , GLU B:1294 , THR B:1312 , ASN B:1318 , PHE B:1319	BINDING SITE FOR RESIDUE 0R0 A2347
06	AC6	SOFTWARE	THR A:1292 , GLU A:1294 , THR A:1312 , ASN A:1318 , MET B:944 , HIS B:976	BINDING SITE FOR RESIDUE 0R0 A2348
07	AC7	SOFTWARE	LYS B:1084 , THR B:1090 , ASN B:1103 , VAL B:1175 , ASN B:1183 , HOH B:2129 , HOH B:2185	BINDING SITE FOR RESIDUE DMS B2354
08	AC8	SOFTWARE	LYS A:1084 , THR A:1090 , ASN A:1103 , VAL A:1175 , ASN A:1183 , HOH A:2143 , HOH A:2149 , HOH A:2159	BINDING SITE FOR RESIDUE DMS A2349
09	AC9	SOFTWARE	ASN A:1096 , ASN A:1097 , ARG A:1202 , ASN A:1206 , LYS A:1212 , PRO A:1214 , HOH A:2153	BINDING SITE FOR RESIDUE DMS A2350
10	BC1	SOFTWARE	ILE B:967 , TRP B:968 , ARG B:969 , LEU B:1133	BINDING SITE FOR RESIDUE EDO B2355
11	BC2	SOFTWARE	SER A:932 , THR A:933 , PRO A:1108 , HOH A:2039 , EDO A:2352 , EDO A:2356	BINDING SITE FOR RESIDUE EDO A2351
12	BC3	SOFTWARE	PHE A:990 , HOH A:2081 , EDO A:2351	BINDING SITE FOR RESIDUE EDO A2352
13	BC4	SOFTWARE	ASN A:884 , HOH A:2004 , GLU B:997 , ASN B:998 , GLU B:999	BINDING SITE FOR RESIDUE EDO A2353
14	BC5	SOFTWARE	HIS A:1267 , GLU A:1273 , HIS A:1276 , TYR A:1301	BINDING SITE FOR RESIDUE EDO A2354
15	BC6	SOFTWARE	GLY A:919 , ALA A:921 , GLY A:922 , PRO A:1161 , GLY A:1162 , ASP A:1163	BINDING SITE FOR RESIDUE EDO A2355
16	BC7	SOFTWARE	LYS A:895 , VAL B:1123 , ASP B:1126 , PHE B:1127 , HOH B:2176 , HOH B:2282	BINDING SITE FOR RESIDUE EDO B2356
17	BC8	SOFTWARE	PRO B:1108 , TRP B:1180 , HOH B:2080 , EDO B:2358	BINDING SITE FOR RESIDUE EDO B2357
18	BC9	SOFTWARE	SER B:932 , THR B:933 , GLY B:1107 , ASN B:1182 , EDO B:2357 , EDO B:2364	BINDING SITE FOR RESIDUE EDO B2358
19	CC1	SOFTWARE	LEU A:928 , GLY A:929 , ILE A:1106 , GLY A:1107 , EDO A:2351	BINDING SITE FOR RESIDUE EDO A2356
20	CC2	SOFTWARE	LEU B:1050 , ARG B:1058 , VAL B:1059 , VAL B:1060 , HOH B:2113	BINDING SITE FOR RESIDUE EDO B2359
21	CC3	SOFTWARE	HIS B:943 , ASP B:1036 , ASP B:1039 , LYS B:1042 , HOH B:2097	BINDING SITE FOR RESIDUE EDO B2360
22	CC4	SOFTWARE	LYS B:1207 , SER B:1210 , VAL B:1211 , CYS B:1281 , VAL B:1283 , HOH B:2197 , HOH B:2286	BINDING SITE FOR RESIDUE EDO B2361
23	CC5	SOFTWARE	GLY B:1075 , GLN B:1080 , TYR B:1082 , GLU B:1095 , SER B:1101 , HOH B:2126 , HOH B:2133	BINDING SITE FOR RESIDUE EDO B2362
24	CC6	SOFTWARE	THR A:908 , ASN A:1168 , PRO A:1190 , THR A:1192 , CYS A:1194	BINDING SITE FOR RESIDUE EDO A2357
25	CC7	SOFTWARE	GLY A:1109 , GLY A:1179 , TRP A:1180 , HOH B:2153	BINDING SITE FOR RESIDUE EDO A2358
26	CC8	SOFTWARE	ARG A:1160 , PHE B:990 , SER B:993	BINDING SITE FOR RESIDUE EDO B2363
27	CC9	SOFTWARE	PRO A:910 , ASN A:1168 , ALA A:1169 , THR A:1171 , HOH A:2169	BINDING SITE FOR RESIDUE EDO A2359
28	DC1	SOFTWARE	GLY A:1075 , GLN A:1080 , TYR A:1082 , GLU A:1095 , ALA A:1185 , TRP A:1186 , HOH A:2148	BINDING SITE FOR RESIDUE EDO A2360
29	DC2	SOFTWARE	LEU B:928 , GLY B:929 , SER B:932 , ILE B:1106 , GLY B:1107 , PRO B:1108 , EDO B:2358	BINDING SITE FOR RESIDUE EDO B2364
30	DC3	SOFTWARE	THR B:977 , LYS B:1030	BINDING SITE FOR RESIDUE EDO B2365
31	DC4	SOFTWARE	GLN B:1249 , HIS B:1306 , ASP B:1307 , HOH B:2262 , HOH B:2263 , EDO B:2368	BINDING SITE FOR RESIDUE EDO B2366
32	DC5	SOFTWARE	THR B:908 , CYS B:1100 , ASN B:1168 , PRO B:1190 , THR B:1192 , CYS B:1194	BINDING SITE FOR RESIDUE EDO B2367
33	DC6	SOFTWARE	LEU A:1341 , HOH A:2301 , VAL B:1285 , PHE B:1286 , HOH B:2248 , HOH B:2249 , HOH B:2250 , EDO B:2366	BINDING SITE FOR RESIDUE EDO B2368
34	DC7	SOFTWARE	LYS A:1229 , VAL A:1230 , SER A:1231 , ASP A:1232	BINDING SITE FOR RESIDUE EDO A2361
35	DC8	SOFTWARE	LEU A:1047 , HOH A:2113 , HOH A:2123	BINDING SITE FOR RESIDUE EDO A2362
36	DC9	SOFTWARE	LYS A:1229 , LYS B:1311	BINDING SITE FOR RESIDUE EDO B2369
37	EC1	SOFTWARE	PRO B:910 , PRO B:913 , ASN B:1168 , ALA B:1169 , HOH B:2156 , HOH B:2157	BINDING SITE FOR RESIDUE EDO B2370
38	EC2	SOFTWARE	CYS A:970 , GLU A:971 , SER A:1138 , SER A:1139 , HOH A:2073	BINDING SITE FOR RESIDUE EDO A2363
39	EC3	SOFTWARE	HIS B:1304 , HOH B:2254	BINDING SITE FOR RESIDUE EDO B2371
40	EC4	SOFTWARE	TYR A:1334 , ASP A:1335	BINDING SITE FOR RESIDUE EDO A2364

(no "SS Bond" information available for 5FY1)

Asymmetric Unit

No.	Residues
1	Gly A:1024	-	Pro A:1025
2	Gly A:1107	-	Pro A:1108
3	Gly B:1107	-	Pro B:1108

(no "SAP(SNP)/Variant" information available for 5FY1)

(no "PROSITE Motif" information available for 5FY1)

(no "Exon" information available for 5FY1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh....eee..hhhhhhhhhhhhhhhh....eeeeehhhhhhh.hhhhhhhhhhhhhh...eeeeeeee....................eeeeeeehhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee......hhhhhhhhhhhhhhhh.....hhhhh...........eeeee....eeeee.hhhhheeeeeeeee..eeeeeehhhhhhhhhhhhhhh...........hhhhhhhh....eeeee....eeee....eeeeee...eeeeeeee...hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.........ee......ee..eeeeehhhhhh......hhhhhhhhh.....eeeee..hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fy1 A  880 KDKLNPPTPSIYLENKRDAFFPPLHQFCTNPKNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWRCESNRSHTTIAKYAQYQASSFQESLREENEKGPFKTIKFGTNIDLSDNKKWKLQLHELTKLPAFARVVSAGNLLTHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNVGPLTACQYKLAVERYEWNKLKSVKSPVPMVHLSWNMARNIKVSDPKLFEMIKYCLLKILKQYQTLREALVAAGKEVIWHGRTNDEPAHYCSICEVEVFNLLFVTNESNTQKTYIVHCHDCARKTSKSLENFVVLEQYKMEDLIQVYDQFTLALSLS 1344
                                   889       899       909       919       929       939       949       959       969       979       989       999|     1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342  
                                                                                                                                                 999|                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                 1023

Chain B from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee..hhhhhh.hhhhhhhhh....eeeeehhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.....................eeeeeehhhhhhhhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhhhhhhhh.....hhhhh...........eeeee....eeeee.hhhhheeeeeeeee..eeeeeehhhhhhhhhhhhhhh...........hhhhhhhh....eeeee....eeee....eeeeee...eeeeeeee...hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhheee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.........ee......ee...eeeehhhhhh......hhhhhhhhh.....eeeee..hhhhhhhhhhh...........eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fy1 B  881 DKLNPPTPSIYLENKRDAFFPPLHQFCTNPKNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWRCESNRSHTTIAKYAQYQASSFQESLREENEPFKTIKFGTNIDLSDNKKWKLQLHELTKLPAFARVVSAGNLLTHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNVGPLTACQYKLAVERYEWNKLKSVKSPVPMVHLSWNMARNIKVSDPKLFEMIKYCLLKILKQYQTLREALVAAGKEVIWHGRTNDEPAHYCSICEVEVFNLLFVTNESNTQKTYIVHCHDCARKTSKSLENFVVLEQYKMEDLIQVYDQFTLALSLSSSSAENL 1351
                                   890       900       910       920       930       940       950       960       970       980       990      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325      1335      1345      
                                                                                                                                                999|                                                                                                                                                                                                                                                                                                                                      
                                                                                                                                                1025

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5FY1)

(no "CATH Domain" information available for 5FY1)

(no "Pfam Domain" information available for 5FY1)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		0R0	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DMS	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]
		DC4	[ RasMol ]	+environment [ RasMol ]
		DC5	[ RasMol ]	+environment [ RasMol ]
		DC6	[ RasMol ]	+environment [ RasMol ]
		DC7	[ RasMol ]	+environment [ RasMol ]
		DC8	[ RasMol ]	+environment [ RasMol ]
		DC9	[ RasMol ]	+environment [ RasMol ]
		EC1	[ RasMol ]	+environment [ RasMol ]
		EC2	[ RasMol ]	+environment [ RasMol ]
		EC3	[ RasMol ]	+environment [ RasMol ]
		EC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:1024 - Pro A:1025	[ RasMol ]
		Gly A:1107 - Pro A:1108	[ RasMol ]
		Gly B:1107 - Pro B:1108	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	5fy1
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	UTY_HUMAN \| O14607
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	UTY_HUMAN \| O14607
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	UTY_HUMAN \| O14607	:	3zli 3zpo 4uf0 5a1l 5fxv 5fxw 5fxx 5fxz 5fy0 5fy7 5fym

5fxv	CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH N05859B
5fxw	CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH FUMARATE
5fxx	CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH OXALOACETATE
5fxz	CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH CITRATE
5fy0	CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH L-MALATE
5fy4	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN COMPLEX WITH SUCCINATE
5fy5	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN COMPLEX WITH FUMARATE
5fy7	CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH SUCCINATE
5fy8	CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH D- THREO-ISOCITRATE
5fy9	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN COMPLEX WITH PYRUVATE
5fyb	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN COMPLEX WITH MC1648
5fyc	CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH SUCCINATE
5fyh	CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH FUMARATE
5fyi	CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH PYRUVATE
5fym	CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH D-2-HYDROXYGLUTARATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 40)

Sites (40, 40)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File