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Title :   CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH EPITHERAPUETIC COMPOUND 2-(((2-((2-(DIMETHYLAMINO)ETHYL)(ETHYL)AMINO)-2-OXOETHYL) AMINO)METHYL)ISONICOTINIC ACID.

Authors :   V. Srikannathasan, C. Johansson, C. Gileadi, K. Tobias, J. Kopec, F. Vo C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann

Date :   22 Dec 14 (Deposition) - 14 Jan 15 (Release) - 29 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.78

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Johansson, S. Velupillai, A. Tumber, A. Szykowska, E. S. Hookway, R. P. Nowak, C. Strain-Damerell, C. Gileadi, M. Philpott, N. Burgess-Brown, N. Wu, J. Kopec, A. Nuzzi, H. Steuber, U. Egner, V. Badock, S. Munro, N. B. Lathangue, S. Westaway, J. Brown, N. Athanasou, R. Prinjha, P. E. Brennan, U. Oppermann
Structural Analysis Of Human Kdm5B Guides Histone Demethylase Inhibitor Development.
Nat. Chem. Biol. V. 12 539 2016
PubMed-ID: 27214403 | Reference-DOI: 10.1038/NCHEMBIO.2087

Molecule 1 - HISTONE DEMETHYLASE UTY
	Chains	:	A
	EC Number	:	1.14.11.-
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PFB-CT10HF-LIC
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	JMJC DOMAIN, RESIDUES 878-1347
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	UBIQUITOUSLY-TRANSCRIBED TPR PROTEIN ON THE Y CHROMOSOME, UBIQUITOUSLY-TRANSCRIBED Y CHROMOSOME TETRATRICOPEPTIDE REPEAT PROTEIN

Molecule 2 - HISTONE DEMETHYLASE UTY
	Chains	:	B
	EC Number	:	1.14.11.-
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PFB-CT10HF-LIC
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	JMJC DOMAIN, RESIDUES 878-1347
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	UBIQUITOUSLY-TRANSCRIBED TPR PROTEIN ON THE Y CHROMOSOME, UBIQUITOUSLY-TRANSCRIBED Y CHROMOSOME TETRATRICOPEPTIDE REPEAT PROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 26)

No.	Name	Count	Type	Full Name
1	EDO	20	Ligand/Ion	1,2-ETHANEDIOL
2	FE2	2	Ligand/Ion	FE (II) ION
3	MMK	2	Ligand/Ion	2-{[(2-{[(E)-2-(DIMETHYLAMINO)ETHENYL](ETHYL)AMINO}-2-OXOETHYL)AMINO]METHYL}PYRIDINE-4-CARBOXYLIC ACID
4	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 10)

No.	Name	Count	Type	Full Name
1	EDO	8	Ligand/Ion	1,2-ETHANEDIOL
2	FE2	1	Ligand/Ion	FE (II) ION
3	MMK	1	Ligand/Ion	2-{[(2-{[(E)-2-(DIMETHYLAMINO)ETHENYL](ETHYL)AMINO}-2-OXOETHYL)AMINO]METHYL}PYRIDINE-4-CARBOXYLIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 14)

No.	Name	Count	Type	Full Name
1	EDO	12	Ligand/Ion	1,2-ETHANEDIOL
2	FE2	1	Ligand/Ion	FE (II) ION
3	MMK	1	Ligand/Ion	2-{[(2-{[(E)-2-(DIMETHYLAMINO)ETHENYL](ETHYL)AMINO}-2-OXOETHYL)AMINO]METHYL}PYRIDINE-4-CARBOXYLIC ACID
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:1093 , GLU A:1095 , HIS A:1173 , HOH A:2128 , MMK A:2268	BINDING SITE FOR RESIDUE FE2 A2267
02	AC2	SOFTWARE	PHE A:1031 , GLN A:1080 , LYS A:1084 , THR A:1090 , HIS A:1093 , GLU A:1095 , ASN A:1096 , ASN A:1103 , TRP A:1113 , HIS A:1173 , VAL A:1175 , HOH A:2115 , HOH A:2128 , HOH A:2184 , FE2 A:2267	BINDING SITE FOR RESIDUE MMK A2268
03	AC3	SOFTWARE	CYS A:1278 , CYS A:1281 , CYS A:1305 , CYS A:1308	BINDING SITE FOR RESIDUE ZN A2269
04	AC4	SOFTWARE	HIS B:1093 , GLU B:1095 , HIS B:1173 , HOH B:2126 , MMK B:2268	BINDING SITE FOR RESIDUE FE2 B2267
05	AC5	SOFTWARE	PHE B:1031 , TYR B:1082 , LYS B:1084 , THR B:1090 , HIS B:1093 , GLU B:1095 , ASN B:1096 , ASN B:1103 , TRP B:1113 , HIS B:1173 , VAL B:1175 , HOH B:2126 , FE2 B:2267 , EDO B:2276	BINDING SITE FOR RESIDUE MMK B2268
06	AC6	SOFTWARE	CYS B:1278 , CYS B:1281 , CYS B:1305 , CYS B:1308	BINDING SITE FOR RESIDUE ZN B2269
07	AC7	SOFTWARE	LYS A:895 , VAL B:1123 , ASP B:1126 , PHE B:1127 , HOH B:2258	BINDING SITE FOR RESIDUE EDO B2270
08	AC8	SOFTWARE	GLN B:986 , TRP B:1180 , HOH B:2064	BINDING SITE FOR RESIDUE EDO B2271
09	AC9	SOFTWARE	THR A:908 , ASN A:1168 , ALA A:1169 , THR A:1192 , CYS A:1194 , HOH A:2144	BINDING SITE FOR RESIDUE EDO A2270
10	BC1	SOFTWARE	THR A:1252 , ALA A:1256 , PHE B:1236 , GLU B:1237	BINDING SITE FOR RESIDUE EDO A2271
11	BC2	SOFTWARE	PHE A:990 , GLY B:919 , ASP B:1163 , HOH B:2017 , HOH B:2151	BINDING SITE FOR RESIDUE EDO B2272
12	BC3	SOFTWARE	GLU A:1294 , HIS B:943 , MET B:944 , ASP B:1036 , EDO B:2274	BINDING SITE FOR RESIDUE EDO B2273
13	BC4	SOFTWARE	HIS B:943 , MET B:944 , GLU B:946 , ASN B:1034 , ILE B:1035 , ASP B:1036 , EDO B:2273	BINDING SITE FOR RESIDUE EDO B2274
14	BC5	SOFTWARE	PRO B:910 , PRO B:913 , ASN B:1168 , ALA B:1169 , CYS B:1194 , LEU B:1198 , HOH B:2135 , HOH B:2136 , EDO B:2281	BINDING SITE FOR RESIDUE EDO B2275
15	BC6	SOFTWARE	GLY B:1075 , TYR B:1082 , GLU B:1095 , SER B:1101 , ALA B:1185 , ASN B:1187 , HOH B:2131 , MMK B:2268	BINDING SITE FOR RESIDUE EDO B2276
16	BC7	SOFTWARE	HIS B:1071 , PRO B:1214 , TYR B:1277 , HOH B:2209	BINDING SITE FOR RESIDUE EDO B2277
17	BC8	SOFTWARE	ILE B:967 , TRP B:968 , ARG B:969 , ASN B:1131 , HOH B:2259	BINDING SITE FOR RESIDUE EDO B2278
18	BC9	SOFTWARE	SER A:932 , THR A:933 , GLN A:986 , GLY A:1107 , PRO A:1108 , ASN A:1182 , EDO A:2273 , EDO A:2275	BINDING SITE FOR RESIDUE EDO A2272
19	CC1	SOFTWARE	GLN A:986 , PHE A:990 , TRP A:1180 , HOH A:2066 , EDO A:2272	BINDING SITE FOR RESIDUE EDO A2273
20	CC2	SOFTWARE	ASN B:1223 , ARG B:1226 , ARG B:1269 , ASN B:1271 , HOH B:2174	BINDING SITE FOR RESIDUE EDO B2279
21	CC3	SOFTWARE	THR B:1252 , GLU B:1255 , ALA B:1256	BINDING SITE FOR RESIDUE EDO B2280
22	CC4	SOFTWARE	THR B:908 , ASN B:1168 , ALA B:1169 , THR B:1192 , CYS B:1194 , EDO B:2275	BINDING SITE FOR RESIDUE EDO B2281
23	CC5	SOFTWARE	ASN A:884 , ARG A:1156 , HOH A:2002 , HOH A:2003 , GLU B:997 , ASN B:998 , GLU B:999	BINDING SITE FOR RESIDUE EDO A2274
24	CC6	SOFTWARE	LEU A:928 , GLY A:929 , SER A:932 , ILE A:1106 , GLY A:1107 , PRO A:1108 , EDO A:2272	BINDING SITE FOR RESIDUE EDO A2275
25	CC7	SOFTWARE	GLU A:999 , HOH A:2072 , ASN B:884	BINDING SITE FOR RESIDUE EDO A2276
26	CC8	SOFTWARE	HIS A:1267 , HIS A:1276 , TYR A:1301	BINDING SITE FOR RESIDUE EDO A2277

(no "SS Bond" information available for 4UF0)

Asymmetric Unit

No.	Residues
1	Gly A:1024	-	Pro A:1025
2	Gly A:1107	-	Pro A:1108
3	Gly B:1107	-	Pro B:1108

(no "SAP(SNP)/Variant" information available for 4UF0)

(no "PROSITE Motif" information available for 4UF0)

(no "Exon" information available for 4UF0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh....eee..hhhhhhhhhhhhhhhh....eeeeehhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee....................eeeeeeehhhhhhhhhhhhhhhhhhhh......eeeeeeeee......hhhhhhhhhhhhhhhh.....hhhhhh..........eeeee....eeeee.hhhhheeeeeeeee..eeeeeehhhhhhhhhhhhhhh...........hhhhhhhh....eeeee....eeee....eeeeee...eeeeeeee...hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.........ee......ee..eeeeehhhhhh......hhhhhhhhh.....eeeee..hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uf0 A  880 KDKLNPPTPSIYLENKRDAFFPPLHQFCTNPKNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWRCESNRSHTTIAKYAQYQASSFQESLREENEKGPFKTIKFGTNIDLSDNKKWKLQLHELTKLPAFARVVSAGNLLTHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNVGPLTACQYKLAVERYEWNKLKSVKSPVPMVHLSWNMARNIKVSDPKLFEMIKYCLLKILKQYQTLREALVAAGKEVIWHGRTNEEPAHYCSICEVEVFNLLFVTNESNTQKTYIVHCHDCARKTSKSLENFVVLEQYKMEDLIQVYDQFTLALSLSS 1345
                                   889       899       909       919       929       939       949       959       969       979       989       999|     1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342   
                                                                                                                                                 999|                                                                                                                                                                                                                                                                                                                                  
                                                                                                                                                 1023

Chain B from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee....hhhhhhhhhhhhhh....eeeeehhhhhhh.hhhhhhhhhhhhhh...eeeeeeee....................eeeeeeehhhhhhhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhhhhhhhh.....hhhhhh..........eeeee....eeeee.hhhhheeeeeeeee..eeeeeehhhhhhhhhhhhhh............hhhhhhhh....eeeee....eeee....eeeeee...eeeeeeee...hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.........ee......ee..eeeeehhhhhh......hhhhhhhhh.....eeeee..hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uf0 B  881 DKLNPPTPSIYLENKRDAFFPPLHQFCTNPKNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWRCESNRSHTTIAKYAQYQASSFQESLREENEFKTIKFGTNIDLSDNKKWKLQLHELTKLPAFARVVSAGNLLTHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNVGPLTACQYKLAVERYEWNKLKSVKSPVPMVHLSWNMARNIKVSDPKLFEMIKYCLLKILKQYQTLREALVAAGKEVIWHGRTNDEPAHYCSICEVEVFNLLFVTNESNTQKTYIVHCHDCARKTSKSLENFVVLEQYKMEDLIEVYDQFTLALSLSS 1345
                                   890       900       910       920       930       940       950       960       970       980       990      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336         
                                                                                                                                                999|                                                                                                                                                                                                                                                                                                                               
                                                                                                                                                1026

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	Cis Peptide Bonds
		Gly A:1024 - Pro A:1025	[ RasMol ]
		Gly A:1107 - Pro A:1108	[ RasMol ]
		Gly B:1107 - Pro B:1108	[ RasMol ]

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