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| Title | CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLAS COMPLEX WITH N08619B | |
| Keywords | TRANSFERASE, PANDDA, FRAGMENT SOAKING, X-RAY FRAGMENT SCREEN | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 5FY1 | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | HISTONE DEMETHYLASE UTY | A | 442 | 3523 | 0 |
| 2 | Protein | HISTONE DEMETHYLASE UTY | B | 446 | 3522 | 0 |
| 3 | Ligand | HISTONE DEMETHYLASE UTY | A | 20 | 0 | 84 |
| 4 | Ligand | HISTONE DEMETHYLASE UTY | B | 20 | 0 | 74 |
| 5 | Water | 592 | 0 | 592 | ||
| total | 1520 | 7045 | 750 |
| Unit 1 | LYS880 ASP881 LYS882 LEU883 ASN884 PRO885 PRO886 THR887 PRO888 SER889 ILE890 TYR891 LEU892 GLU893 ASN894 LYS895 ARG896 ASP897 ALA898 PHE899 PHE900 PRO901 PRO902 LEU903 HIS904 GLN905 PHE906 CYS907 THR908 ASN909 PRO910 LYS911 ASN912 PRO913 VAL914 THR915 VAL916 ILE917 ARG918 GLY919 LEU920 ALA921 GLY922 ALA923 LEU924 LYS925 LEU926 ASP927 LEU928 GLY929 LEU930 PHE931 SER932 THR933 LYS934 THR935 LEU936 VAL937 GLU938 ALA939 ASN940 ASN941 GLU942 HIS943 MET944 VAL945 GLU946 VAL947 ARG948 THR949 GLN950 LEU951 LEU952 GLN953 PRO954 ALA955 ASP956 GLU957 ASN958 TRP959 ASP960 PRO961 THR962 GLY963 THR964 LYS965 LYS966 ILE967 TRP968 ARG969 CYS970 GLU971 SER972 ASN973 ARG974 SER975 HIS976 THR977 THR978 ILE979 ALA980 LYS981 TYR982 ALA983 GLN984 TYR985 GLN986 ALA987 SER988 SER989 PHE990 GLN991 GLU992 SER993 LEU994 ARG995 GLU996 GLU997 ASN998 GLU999 LYS1023 GLY1024 PRO1025 PHE1026 LYS1027 THR1028 ILE1029 LYS1030 PHE1031 GLY1032 THR1033 ASN1034 ILE1035 ASP1036 LEU1037 SER1038 ASP1039 ASN1040 LYS1041 LYS1042 TRP1043 LYS1044 LEU1045 GLN1046 LEU1047 HIS1048 GLU1049 LEU1050 THR1051 LYS1052 LEU1053 PRO1054 ALA1055 PHE1056 ALA1057 ARG1058 VAL1059 VAL1060 SER1061 ALA1062 GLY1063 ASN1064 LEU1065 LEU1066 THR1067 HIS1068 VAL1069 GLY1070 HIS1071 THR1072 ILE1073 LEU1074 GLY1075 MET1076 ASN1077 THR1078 VAL1079 GLN1080 LEU1081 TYR1082 MET1083 LYS1084 VAL1085 PRO1086 GLY1087 SER1088 ARG1089 THR1090 PRO1091 GLY1092 HIS1093 GLN1094 GLU1095 ASN1096 ASN1097 ASN1098 PHE1099 CYS1100 SER1101 VAL1102 ASN1103 ILE1104 ASN1105 ILE1106 GLY1107 PRO1108 GLY1109 ASP1110 CYS1111 GLU1112 TRP1113 PHE1114 VAL1115 VAL1116 PRO1117 GLU1118 ASP1119 TYR1120 TRP1121 GLY1122 VAL1123 LEU1124 ASN1125 ASP1126 PHE1127 CYS1128 GLU1129 LYS1130 ASN1131 ASN1132 LEU1133 ASN1134 PHE1135 LEU1136 MET1137 SER1138 SER1139 TRP1140 TRP1141 PRO1142 ASN1143 LEU1144 GLU1145 ASP1146 LEU1147 TYR1148 GLU1149 ALA1150 ASN1151 VAL1152 PRO1153 VAL1154 TYR1155 ARG1156 PHE1157 ILE1158 GLN1159 ARG1160 PRO1161 GLY1162 ASP1163 LEU1164 VAL1165 TRP1166 ILE1167 ASN1168 ALA1169 GLY1170 THR1171 VAL1172 HIS1173 TRP1174 VAL1175 GLN1176 ALA1177 VAL1178 GLY1179 TRP1180 CYS1181 ASN1182 ASN1183 ILE1184 ALA1185 TRP1186 ASN1187 VAL1188 GLY1189 PRO1190 LEU1191 THR1192 ALA1193 CYS1194 GLN1195 TYR1196 LYS1197 LEU1198 ALA1199 VAL1200 GLU1201 ARG1202 TYR1203 GLU1204 TRP1205 ASN1206 LYS1207 LEU1208 LYS1209 SER1210 VAL1211 LYS1212 SER1213 PRO1214 VAL1215 PRO1216 MET1217 VAL1218 HIS1219 LEU1220 SER1221 TRP1222 ASN1223 MET1224 ALA1225 ARG1226 ASN1227 ILE1228 LYS1229 VAL1230 SER1231 ASP1232 PRO1233 LYS1234 LEU1235 PHE1236 GLU1237 MET1238 ILE1239 LYS1240 TYR1241 CYS1242 LEU1243 LEU1244 LYS1245 ILE1246 LEU1247 LYS1248 GLN1249 TYR1250 GLN1251 THR1252 LEU1253 ARG1254 GLU1255 ALA1256 LEU1257 VAL1258 ALA1259 ALA1260 GLY1261 LYS1262 GLU1263 VAL1264 ILE1265 TRP1266 HIS1267 GLY1268 ARG1269 THR1270 ASN1271 ASP1272 GLU1273 PRO1274 ALA1275 HIS1276 TYR1277 CYS1278 SER1279 ILE1280 CYS1281 GLU1282 VAL1283 GLU1284 VAL1285 PHE1286 ASN1287 LEU1288 LEU1289 PHE1290 VAL1291 THR1292 ASN1293 GLU1294 SER1295 ASN1296 THR1297 GLN1298 LYS1299 THR1300 TYR1301 ILE1302 VAL1303 HIS1304 CYS1305 HIS1306 ASP1307 CYS1308 ALA1309 ARG1310 LYS1311 THR1312 SER1313 LYS1314 SER1315 LEU1316 GLU1317 ASN1318 PHE1319 VAL1320 VAL1321 LEU1322 GLU1323 GLN1324 TYR1325 LYS1326 MET1327 GLU1328 ASP1329 LEU1330 ILE1331 GLN1332 VAL1333 TYR1334 ASP1335 GLN1336 PHE1337 THR1338 LEU1339 ALA1340 LEU1341 SER1342 LEU1343 SER1344 |
| Unit 2 | ASP881 LYS882 LEU883 ASN884 PRO885 PRO886 THR887 PRO888 SER889 ILE890 TYR891 LEU892 GLU893 ASN894 LYS895 ARG896 ASP897 ALA898 PHE899 PHE900 PRO901 PRO902 LEU903 HIS904 GLN905 PHE906 CYS907 THR908 ASN909 PRO910 LYS911 ASN912 PRO913 VAL914 THR915 VAL916 ILE917 ARG918 GLY919 LEU920 ALA921 GLY922 ALA923 LEU924 LYS925 LEU926 ASP927 LEU928 GLY929 LEU930 PHE931 SER932 THR933 LYS934 THR935 LEU936 VAL937 GLU938 ALA939 ASN940 ASN941 GLU942 HIS943 MET944 VAL945 GLU946 VAL947 ARG948 THR949 GLN950 LEU951 LEU952 GLN953 PRO954 ALA955 ASP956 GLU957 ASN958 TRP959 ASP960 PRO961 THR962 GLY963 THR964 LYS965 LYS966 ILE967 TRP968 ARG969 CYS970 GLU971 SER972 ASN973 ARG974 SER975 HIS976 THR977 THR978 ILE979 ALA980 LYS981 TYR982 ALA983 GLN984 TYR985 GLN986 ALA987 SER988 SER989 PHE990 GLN991 GLU992 SER993 LEU994 ARG995 GLU996 GLU997 ASN998 GLU999 PRO1025 PHE1026 LYS1027 THR1028 ILE1029 LYS1030 PHE1031 GLY1032 THR1033 ASN1034 ILE1035 ASP1036 LEU1037 SER1038 ASP1039 ASN1040 LYS1041 LYS1042 TRP1043 LYS1044 LEU1045 GLN1046 LEU1047 HIS1048 GLU1049 LEU1050 THR1051 LYS1052 LEU1053 PRO1054 ALA1055 PHE1056 ALA1057 ARG1058 VAL1059 VAL1060 SER1061 ALA1062 GLY1063 ASN1064 LEU1065 LEU1066 THR1067 HIS1068 VAL1069 GLY1070 HIS1071 THR1072 ILE1073 LEU1074 GLY1075 MET1076 ASN1077 THR1078 VAL1079 GLN1080 LEU1081 TYR1082 MET1083 LYS1084 VAL1085 PRO1086 GLY1087 SER1088 ARG1089 THR1090 PRO1091 GLY1092 HIS1093 GLN1094 GLU1095 ASN1096 ASN1097 ASN1098 PHE1099 CYS1100 SER1101 VAL1102 ASN1103 ILE1104 ASN1105 ILE1106 GLY1107 PRO1108 GLY1109 ASP1110 CYS1111 GLU1112 TRP1113 PHE1114 VAL1115 VAL1116 PRO1117 GLU1118 ASP1119 TYR1120 TRP1121 GLY1122 VAL1123 LEU1124 ASN1125 ASP1126 PHE1127 CYS1128 GLU1129 LYS1130 ASN1131 ASN1132 LEU1133 ASN1134 PHE1135 LEU1136 MET1137 SER1138 SER1139 TRP1140 TRP1141 PRO1142 ASN1143 LEU1144 GLU1145 ASP1146 LEU1147 TYR1148 GLU1149 ALA1150 ASN1151 VAL1152 PRO1153 VAL1154 TYR1155 ARG1156 PHE1157 ILE1158 GLN1159 ARG1160 PRO1161 GLY1162 ASP1163 LEU1164 VAL1165 TRP1166 ILE1167 ASN1168 ALA1169 GLY1170 THR1171 VAL1172 HIS1173 TRP1174 VAL1175 GLN1176 ALA1177 VAL1178 GLY1179 TRP1180 CYS1181 ASN1182 ASN1183 ILE1184 ALA1185 TRP1186 ASN1187 VAL1188 GLY1189 PRO1190 LEU1191 THR1192 ALA1193 CYS1194 GLN1195 TYR1196 LYS1197 LEU1198 ALA1199 VAL1200 GLU1201 ARG1202 TYR1203 GLU1204 TRP1205 ASN1206 LYS1207 LEU1208 LYS1209 SER1210 VAL1211 LYS1212 SER1213 PRO1214 VAL1215 PRO1216 MET1217 VAL1218 HIS1219 LEU1220 SER1221 TRP1222 ASN1223 MET1224 ALA1225 ARG1226 ASN1227 ILE1228 LYS1229 VAL1230 SER1231 ASP1232 PRO1233 LYS1234 LEU1235 PHE1236 GLU1237 MET1238 ILE1239 LYS1240 TYR1241 CYS1242 LEU1243 LEU1244 LYS1245 ILE1246 LEU1247 LYS1248 GLN1249 TYR1250 GLN1251 THR1252 LEU1253 ARG1254 GLU1255 ALA1256 LEU1257 VAL1258 ALA1259 ALA1260 GLY1261 LYS1262 GLU1263 VAL1264 ILE1265 TRP1266 HIS1267 GLY1268 ARG1269 THR1270 ASN1271 ASP1272 GLU1273 PRO1274 ALA1275 HIS1276 TYR1277 CYS1278 SER1279 ILE1280 CYS1281 GLU1282 VAL1283 GLU1284 VAL1285 PHE1286 ASN1287 LEU1288 LEU1289 PHE1290 VAL1291 THR1292 ASN1293 GLU1294 SER1295 ASN1296 THR1297 GLN1298 LYS1299 THR1300 TYR1301 ILE1302 VAL1303 HIS1304 CYS1305 HIS1306 ASP1307 CYS1308 ALA1309 ARG1310 LYS1311 THR1312 SER1313 LYS1314 SER1315 LEU1316 GLU1317 ASN1318 PHE1319 VAL1320 VAL1321 LEU1322 GLU1323 GLN1324 TYR1325 LYS1326 MET1327 GLU1328 ASP1329 LEU1330 ILE1331 GLN1332 VAL1333 TYR1334 ASP1335 GLN1336 PHE1337 THR1338 LEU1339 ALA1340 LEU1341 SER1342 LEU1343 SER1344 SER1345 SER1346 SER1347 ALA1348 GLU1349 ASN1350 LEU1351 |
| Unit 3 | ZN2345 MN2346 0R02347 0R02348 DMS2349 DMS2350 EDO2351 EDO2352 EDO2353 EDO2354 EDO2355 EDO2356 EDO2357 EDO2358 EDO2359 EDO2360 EDO2361 EDO2362 EDO2363 EDO2364 |
| Unit 4 | ZN2352 MN2353 DMS2354 EDO2355 EDO2356 EDO2357 EDO2358 EDO2359 EDO2360 EDO2361 EDO2362 EDO2363 EDO2364 EDO2365 EDO2366 EDO2367 EDO2368 EDO2369 EDO2370 EDO2371 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |