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Biol. Unit 1
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Asym.Unit (169 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH N08619B
Authors
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, N. M. Pearce F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Date
:
03 Mar 16 (Deposition) - 16 Mar 16 (Release) - 16 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Pandda, Fragment Soaking, X-Ray Fragment Screening
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, N. M. Pearce, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Crystal Structure Of Jmjc Domain Of Human Histone Demethylase Uty In Complex With N08619B
To Be Published
[
close entry info
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: 2-HYDROXYBENZONITRILE (0R0a)
1b: 2-HYDROXYBENZONITRILE (0R0b)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0R0
2
Ligand/Ion
2-HYDROXYBENZONITRILE
2
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
3
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
21: DC8 (SOFTWARE)
22: DC9 (SOFTWARE)
23: EC2 (SOFTWARE)
24: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:1278 , CYS A:1281 , CYS A:1305 , CYS A:1308
BINDING SITE FOR RESIDUE ZN A2345
02
AC4
SOFTWARE
HIS A:1093 , GLU A:1095 , HIS A:1173 , HOH A:2148 , HOH A:2149 , HOH A:2156
BINDING SITE FOR RESIDUE MN A2346
03
AC5
SOFTWARE
MET A:944 , HIS A:976 , GLU B:1294 , THR B:1312 , ASN B:1318 , PHE B:1319
BINDING SITE FOR RESIDUE 0R0 A2347
04
AC6
SOFTWARE
THR A:1292 , GLU A:1294 , THR A:1312 , ASN A:1318 , MET B:944 , HIS B:976
BINDING SITE FOR RESIDUE 0R0 A2348
05
AC8
SOFTWARE
LYS A:1084 , THR A:1090 , ASN A:1103 , VAL A:1175 , ASN A:1183 , HOH A:2143 , HOH A:2149 , HOH A:2159
BINDING SITE FOR RESIDUE DMS A2349
06
AC9
SOFTWARE
ASN A:1096 , ASN A:1097 , ARG A:1202 , ASN A:1206 , LYS A:1212 , PRO A:1214 , HOH A:2153
BINDING SITE FOR RESIDUE DMS A2350
07
BC2
SOFTWARE
SER A:932 , THR A:933 , PRO A:1108 , HOH A:2039 , EDO A:2352 , EDO A:2356
BINDING SITE FOR RESIDUE EDO A2351
08
BC3
SOFTWARE
PHE A:990 , HOH A:2081 , EDO A:2351
BINDING SITE FOR RESIDUE EDO A2352
09
BC4
SOFTWARE
ASN A:884 , HOH A:2004 , GLU B:997 , ASN B:998 , GLU B:999
BINDING SITE FOR RESIDUE EDO A2353
10
BC5
SOFTWARE
HIS A:1267 , GLU A:1273 , HIS A:1276 , TYR A:1301
BINDING SITE FOR RESIDUE EDO A2354
11
BC6
SOFTWARE
GLY A:919 , ALA A:921 , GLY A:922 , PRO A:1161 , GLY A:1162 , ASP A:1163
BINDING SITE FOR RESIDUE EDO A2355
12
BC7
SOFTWARE
LYS A:895 , VAL B:1123 , ASP B:1126 , PHE B:1127 , HOH B:2176 , HOH B:2282
BINDING SITE FOR RESIDUE EDO B2356
13
CC1
SOFTWARE
LEU A:928 , GLY A:929 , ILE A:1106 , GLY A:1107 , EDO A:2351
BINDING SITE FOR RESIDUE EDO A2356
14
CC6
SOFTWARE
THR A:908 , ASN A:1168 , PRO A:1190 , THR A:1192 , CYS A:1194
BINDING SITE FOR RESIDUE EDO A2357
15
CC7
SOFTWARE
GLY A:1109 , GLY A:1179 , TRP A:1180 , HOH B:2153
BINDING SITE FOR RESIDUE EDO A2358
16
CC8
SOFTWARE
ARG A:1160 , PHE B:990 , SER B:993
BINDING SITE FOR RESIDUE EDO B2363
17
CC9
SOFTWARE
PRO A:910 , ASN A:1168 , ALA A:1169 , THR A:1171 , HOH A:2169
BINDING SITE FOR RESIDUE EDO A2359
18
DC1
SOFTWARE
GLY A:1075 , GLN A:1080 , TYR A:1082 , GLU A:1095 , ALA A:1185 , TRP A:1186 , HOH A:2148
BINDING SITE FOR RESIDUE EDO A2360
19
DC6
SOFTWARE
LEU A:1341 , HOH A:2301 , VAL B:1285 , PHE B:1286 , HOH B:2248 , HOH B:2249 , HOH B:2250 , EDO B:2366
BINDING SITE FOR RESIDUE EDO B2368
20
DC7
SOFTWARE
LYS A:1229 , VAL A:1230 , SER A:1231 , ASP A:1232
BINDING SITE FOR RESIDUE EDO A2361
21
DC8
SOFTWARE
LEU A:1047 , HOH A:2113 , HOH A:2123
BINDING SITE FOR RESIDUE EDO A2362
22
DC9
SOFTWARE
LYS A:1229 , LYS B:1311
BINDING SITE FOR RESIDUE EDO B2369
23
EC2
SOFTWARE
CYS A:970 , GLU A:971 , SER A:1138 , SER A:1139 , HOH A:2073
BINDING SITE FOR RESIDUE EDO A2363
24
EC4
SOFTWARE
TYR A:1334 , ASP A:1335
BINDING SITE FOR RESIDUE EDO A2364
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (169 KB)
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