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(-) Description

Title :  MCL-1 COMPLEXED WITH SMALL MOLECULE INHIBITOR
 
Authors :  B. Zhao
Date :  14 Dec 15  (Deposition) - 02 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Mcl-1, Inhibitor, Apoptosis-Apoptosis Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. F. Pelz, Z. Bian, B. Zhao, S. Shaw, J. C. Tarr, J. Belmar, C. Gregg, D. V. Camper, C. M. Goodwin, A. L. Arnold, J. L. Sensintaffar, A. Friberg, O. W. Rossanese, T. Lee, E. T. Olejniczak, S. W. Fesik
Discovery Of 2-Indole-Acylsulfonamide Myeloid Cell Leukemia 1 (Mcl-1) Inhibitors Using Fragment-Based Methods.
J. Med. Chem. V. 59 2054 2016
PubMed-ID: 26878343  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01660

(-) Compounds

Molecule 1 - INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL- 1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 172-320
    GeneMCL1, BCL2L3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBCL-2-LIKE PROTEIN 3,BCL2-L-3,BCL-2-RELATED PROTEIN EAT/MCL1,MCL1/EAT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
15WK1Ligand/Ion2-[5-[1,1,2,2-TETRAKIS(FLUORANYL)ETHYL]-1~{H}-PYRAZOL-3-YL]PHENOL
25WL2Ligand/Ion6-CHLORANYL-~{N}-METHYLSULFONYL-3-(3-NAPHTHALEN-1-YLOXYPROPYL)-1~{H}-INDOLE-2-CARBOXAMIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:227 , PHE A:228 , MET A:231 , VAL A:249 , MET A:250 , GLY A:262 , ARG A:263 , THR A:266 , LEU A:267 , PHE A:270 , 5WL A:402 , 5WK A:403 , HOH A:521 , HOH A:640binding site for residue 5WL A 401
2AC2SOFTWARETHR A:191 , ALA A:227 , LYS A:234 , LEU A:235 , VAL A:249 , HIS A:252 , VAL A:253 , ASP A:256 , 5WL A:401 , HOH A:570 , HOH A:605 , HOH A:609binding site for residue 5WL A 402
3AC3SOFTWAREARG A:176 , ALA A:202 , GLY A:203 , ARG A:207 , ARG A:215 , GLY A:262 , VAL A:265 , THR A:266 , PHE A:319 , 5WL A:401 , HOH A:522 , HOH A:608binding site for residue 5WK A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FC4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FC4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FC4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FC4)

(-) Exons   (0, 0)

(no "Exon" information available for 5FC4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fc4 A 171 GDELYRQSLEIISRYLREQATAGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIANEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIAPLAESITDVLVRTKRDWLVAQRGWDGFVEFFH 320
                                   180       190||     210       220       230       240       250       260       270       280       290       300       310       320
                                              191|                                                                                                                      
                                               202                                                                                                                      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FC4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FC4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FC4)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MCL1_HUMAN | Q078202kbw 2mhs 2nl9 2nla 2pqk 3d7v 3io9 3kj0 3kj1 3kj2 3kz0 3mk8 3pk1 3twu 3wix 3wiy 4bpi 4bpj 4hw2 4hw3 4hw4 4oq5 4oq6 4wgi 4wmr 4wms 4wmt 4wmu 4wmv 4wmw 4wmx 4zbf 4zbi 5c3f 5c6h 5fdo 5fdr 5iez 5if4 5jsb 5ku9 5lof 5mes 5mev 5uum 5vkc

(-) Related Entries Specified in the PDB File

4zbf 4ZBF CONTAINS THE SAME PROTEIN