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(-) Description

Title :  BTK-INHIBITOR CO-STRUCTURE
 
Authors :  T. O. Fischmann
Date :  14 Dec 15  (Deposition) - 23 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Phosphatase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liu, D. Guiadeen, A. Krikorian, X. Gao, J. Wang, S. B. Boga, A. B. Alhassan, Y. Yu, H. Vaccaro, S. Liu, C. Yang, H. Wu, A. Cooper, A. Deman, K. Maloney, V. Honak, Y. D. Gao, T. O. Fischmann, H. Raaijmakers, J. Presland, M. Mansueto, Z. Xu, E. Leccese, J. Zhang-Hoover, I. Knemeyer, C. Garlisi, N. Bays, P. Stivers, P. E. Brandish, A. Hicks, R. Kim, J. A. Kozlowski
Discovery Of 8-Amino-Imidazo[1, 5-A]Pyrazines As Reversible Btk Inhibitors For The Treatment Of Rheumatoid Arthritis
Acs Med. Chem. Lett. V. 7 198 2016
PubMed: search  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.5B00463

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE BTK
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: PROTEIN KINASE DOMAIN (UNP RESIDUES 389-659)
    Gene: BTK, AGMX1, ATK, BPK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR KINASE,BPK,BRUTON TYROSINE KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
15WE1Ligand/Ion4-[8-AZANYL-3-[(2~{S})-1-[4-(DIMETHYLAMINO)BUTANOYL]PYRROLIDIN-2-YL]IMIDAZO[1,5-A]PYRAZIN-1-YL]-~{N}-(1,3-THIAZOL-2-YL)BENZAMIDE
25WH1Ligand/Ion4-[8-AZANYL-3-[(3~{R},6~{S})-1-CYCLOPROPYLCARBONYL-6-METHYL-PIPERIDIN-3-YL]IMIDAZO[1,5-A]PYRAZIN-1-YL]-3-FLUORANYL-~{N}-[4-(TRIFLUOROMETHYL)PYRIDIN-2-YL]BENZAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:408 , VAL A:416 , ALA A:428 , LYS A:430 , GLU A:445 , ALA A:446 , MET A:449 , ILE A:472 , THR A:474 , GLU A:475 , MET A:477 , GLY A:480 , CYS A:481 , ASN A:484 , LEU A:528 , SER A:538 , ASP A:539 , LEU A:542 , HOH A:1130 , HOH A:1156binding site for residue 5WH A 1001
2AC2SOFTWARESER A:394 , TRP A:395 , ILE A:397 , TRP A:421 , TYR A:425 , VAL A:427 , SER A:453 , TYR A:461binding site for residue 5WE A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FBO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:468 -Pro A:469

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FBO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FBO)

(-) Exons   (0, 0)

(no "Exon" information available for 5FBO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.hhh.eeeeeeeeee..eeeeeeee...eeeeeee.......hhhhhhhhhhhhhh.......eeeee......eeee.....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fbo A 392 YGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEES 659
                                   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541 ||    564       574       584       594       604       614       624       634       644       654     
                                                                                                                                                                                 543|                                                                                                      
                                                                                                                                                                                  557
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FBO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FBO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FBO)

(-) Gene Ontology  (49, 49)

Asymmetric/Biological Unit(hide GO term definitions)

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    Arg A:468 - Pro A:469   [ RasMol ]  
 

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  5fbo
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  BTK_HUMAN | Q06187
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BTK_HUMAN | Q06187: 1aww 1awx 1b55 1btk 1bwn 1k2p 1qly 2ge9 2z0p 3gen 3k54 3ocs 3oct 3p08 3pix 3piy 3piz 3pj1 3pj2 3pj3 4nwm 4ot5 4ot6 4otf 4otq 4otr 4rfy 4rfz 4rg0 4rx5 4yhf 4z3v 4zly 4zlz 5bpy 5bq0 5fbn 5j87 5jrs 5kup 5p9f 5p9g 5p9h 5p9i 5p9j 5p9k 5p9l 5p9m 5t18 5u9d 5vgo

(-) Related Entries Specified in the PDB File

5fbn