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(-) Description

Title :  BTK KINASE DOMAIN WITH INHIBITOR 1
 
Authors :  H. C. A. Raaijmakers, D. Vu-Pham
Date :  14 Dec 15  (Deposition) - 03 Feb 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  C,D
Biol. Unit 1:  C  (1x)
Biol. Unit 2:  D  (1x)
Keywords :  Kinase, Phosphatase, Transferase-Transferase Inhibitor Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Liu, D. Guiadeen, A. Krikorian, X. Gao, J. Wang, S. B. Boga, A. B. Alhassan, Y. Yu, H. Vaccaro, S. Liu, C. Yang, H. Wu, A. Cooper, J. De Man, A. Kaptein, K. Maloney, V. Hornak, Y. D. Gao, T. O. Fischmann H. Raaijmakers, D. Vu-Pham, J. Presland, M. Mansueto, Z. Xu, E. Leccese, J. Zhang-Hoover, I. Knemeyer, C. G. Garlisi, N. Bays, P. Stivers, P. E. Brandish, A. Hicks, R. Kim, J. A. Kozlowski
Discovery Of 8-Amino-Imidazo[1, 5-A]Pyrazines As Reversible Btk Inhibitors For The Treatment Of Rheumatoid Arthritis.
Acs Med. Chem. Lett. V. 7 198 2016
PubMed-ID: 26985298  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.5B00463

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE BTK
    ChainsC, D
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF21
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentUNP RESIDUES 389-659
    GeneBTK, AGMX1, ATK, BPK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR KINASE,BPK,BRUTON TYROSINE KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit CD
Biological Unit 1 (1x)C 
Biological Unit 2 (1x) D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric Unit (4, 9)
No.NameCountTypeFull Name
15WE4Ligand/Ion4-[8-AZANYL-3-[(2~{S})-1-[4-(DIMETHYLAMINO)BUTANOYL]PYRROLIDIN-2-YL]IMIDAZO[1,5-A]PYRAZIN-1-YL]-~{N}-(1,3-THIAZOL-2-YL)BENZAMIDE
25WF2Ligand/Ion4-[8-AZANYL-3-[(3~{R})-1-(3-METHYLOXETAN-3-YL)CARBONYLPIPERIDIN-3-YL]IMIDAZO[1,5-A]PYRAZIN-1-YL]-~{N}-[4-(TRIFLUOROMETHYL)PYRIDIN-2-YL]BENZAMIDE
3CL2Ligand/IonCHLORIDE ION
4EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
15WE1Ligand/Ion4-[8-AZANYL-3-[(2~{S})-1-[4-(DIMETHYLAMINO)BUTANOYL]PYRROLIDIN-2-YL]IMIDAZO[1,5-A]PYRAZIN-1-YL]-~{N}-(1,3-THIAZOL-2-YL)BENZAMIDE
25WF1Ligand/Ion4-[8-AZANYL-3-[(3~{R})-1-(3-METHYLOXETAN-3-YL)CARBONYLPIPERIDIN-3-YL]IMIDAZO[1,5-A]PYRAZIN-1-YL]-~{N}-[4-(TRIFLUOROMETHYL)PYRIDIN-2-YL]BENZAMIDE
3CL-1Ligand/IonCHLORIDE ION
4EDO-1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
15WE3Ligand/Ion4-[8-AZANYL-3-[(2~{S})-1-[4-(DIMETHYLAMINO)BUTANOYL]PYRROLIDIN-2-YL]IMIDAZO[1,5-A]PYRAZIN-1-YL]-~{N}-(1,3-THIAZOL-2-YL)BENZAMIDE
25WF1Ligand/Ion4-[8-AZANYL-3-[(3~{R})-1-(3-METHYLOXETAN-3-YL)CARBONYLPIPERIDIN-3-YL]IMIDAZO[1,5-A]PYRAZIN-1-YL]-~{N}-[4-(TRIFLUOROMETHYL)PYRIDIN-2-YL]BENZAMIDE
3CL-1Ligand/IonCHLORIDE ION
4EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU C:408 , ALA C:428 , LYS C:430 , PHE C:442 , MET C:449 , MET C:450 , LEU C:460 , ILE C:472 , THR C:474 , GLU C:475 , MET C:477 , GLY C:480 , CYS C:481 , ASN C:484 , SER C:538 , ASP C:539 , PHE C:540 , LEU C:542 , HOH C:907 , HOH C:918binding site for residue 5WF C 701
2AC2SOFTWARETRP C:421 , TYR C:425 , SER C:453 , TYR C:461 , HOH C:817 , HOH C:873 , HOH C:906 , HOH C:927 , HOH C:946 , 5WE D:703binding site for residue 5WE C 702
3AC3SOFTWAREGLU C:407 , GLY C:409 , VAL C:416 , LYS C:417binding site for residue CL C 703
4AC4SOFTWAREARG D:618 , 5WE D:704 , 5WE D:705binding site for residue CL D 701
5AC5SOFTWARELEU D:408 , VAL D:416 , ALA D:428 , LYS D:430 , PHE D:442 , MET D:449 , LEU D:460 , ILE D:472 , THR D:474 , GLU D:475 , MET D:477 , GLY D:480 , CYS D:481 , ASN D:484 , SER D:538 , ASP D:539 , PHE D:540 , LEU D:542 , HOH D:888 , HOH D:909binding site for residue 5WF D 702
6AC6SOFTWARE5WE C:702 , TRP D:421 , TYR D:425 , SER D:453 , GLN D:459 , TYR D:461 , HOH D:808 , HOH D:839 , HOH D:915binding site for residue 5WE D 703
7AC7SOFTWAREGLU D:624 , CL D:701 , 5WE D:705 , HOH D:857 , HOH D:903binding site for residue 5WE D 704
8AC8SOFTWAREARG D:618 , GLU D:624 , TYR D:627 , THR D:628 , TYR D:631 , CL D:701 , 5WE D:704 , HOH D:901 , HOH D:903 , HOH D:949 , HOH D:953binding site for residue 5WE D 705
9AC9SOFTWARETHR D:403 , PHE D:404 , HOH D:978binding site for residue EDO D 706

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FBN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg C:468 -Pro C:469
2Arg D:468 -Pro D:469

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FBN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FBN)

(-) Exons   (0, 0)

(no "Exon" information available for 5FBN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain C from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeeee..eeeeeeee...eeeeeeee.....hhhhhhhhhhhhh.........eeeee......eeee.....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fbn C 395 WEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEE 658
                                   404       414       424       434       444       454       464       474       484       494       504       514       524       534       544   ||  562       572       582       592       602       612       622       632       642       652      
                                                                                                                                                                                   548|                                                                                                     
                                                                                                                                                                                    557                                                                                                     

Chain D from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhh.eeeeeeeeee..eeeeeeee...eeeeeeee.....hhhhhhhhhhhhh.........eeeee......eeee.....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fbn D 394 SWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEE 658
                                   403       413       423       433       443       453       463       473       483       493       503       513       523       533       543    || 563       573       583       593       603       613       623       633       643       653     
                                                                                                                                                                                    548|                                                                                                   
                                                                                                                                                                                     559                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FBN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FBN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FBN)

(-) Gene Ontology  (49, 49)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BTK_HUMAN | Q061871aww 1awx 1b55 1btk 1bwn 1k2p 1qly 2ge9 2z0p 3gen 3k54 3ocs 3oct 3p08 3pix 3piy 3piz 3pj1 3pj2 3pj3 4nwm 4ot5 4ot6 4otf 4otq 4otr 4rfy 4rfz 4rg0 4rx5 4yhf 4z3v 4zly 4zlz 5bpy 5bq0 5fbo 5j87 5jrs 5kup 5p9f 5p9g 5p9h 5p9i 5p9j 5p9k 5p9l 5p9m 5t18 5u9d 5vgo

(-) Related Entries Specified in the PDB File

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