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(-) Description

Title :  CRYSTAL STRUCTURE OF BRUTON AGAMMABULINEMIA TYROSINE KINASE COMPLEXED WITH BMS-986142 AKA (2S)-6-FLUORO-5-[3-(8-FLUORO-1-METHYL-2,4-DIOXO-1,2,3,4-TETRAHYDROQUINAZOLIN-3-YL)-2-METHYLPHENYL]-2-(2-HYDROXYPROPAN-2-YL)-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-8-CARBOXAMIDE
 
Authors :  J. K. Muckelbauer
Date :  18 Aug 16  (Deposition) - 08 Mar 17  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Btk, Atk, Xla, Psctk1, Agmx1, At, Imd1, Mgc126261, Mgc126262 Bpk, ----, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Watterson, G. V. De Lucca, Q. Shi, C. M. Langevine, Q. Liu, D. G. Batt, M. Beaudoin Bertrand, H. Gong, J. Dai, S. Yip, P. Li, D. Sun, D. R. Wu, C. Wang, Y. Zhang, S. C. Traeger, M. A. Pattoli, S. Skala, L. Cheng, M. T. Obermeier, R. Vickery, L. N. Discenza, C. J. D'Arienzo, Y. Zhang, E. Heimrich, K. M. Gillooly, T. L. Taylor, C. Pulicicchio, K. W. Mcintyre, M. A. Galella, A. J. Tebben, J. K. Muckelbauer, C. Chang R. Rampulla, A. Mathur, L. Salter-Cid, J. C. Barrish, P. H. Carter, A. Fura, J. R. Burke, J. A. Tino
Discovery Of 6-Fluoro-5-(R)-(3-(S)-(8-Fluoro-1-Methyl-2, 4-Dioxo-1, 2-Dihydroquinazolin-3(4H)-Yl)-2-Methylphenyl)-2-(S) -(2-Hydroxypropan-2-Yl)-2, 3, 4, 9-Tetrahydro-1H-Carbazole-8-Carboxamide (Bms-986142): A Reversible Inhibitor Of Bruton'S Tyrosine Kinase (Btk) Conformationally Constrained By Two Locked Atropisomers.
J. Med. Chem. V. 59 9173 2016
PubMed-ID: 27583770  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01088

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE BTK
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: BACULOVIRUS
    Expression System Strain: SF9
    Expression System Taxid: 10469
    Expression System Vector Type: PLASMID
    Fragment: KINASE DOMAIN
    Gene: BTK, AGMX1, ATK, BPK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR KINASE,BPK,BRUTON TYROSINE KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
173T1Ligand/Ion6-FLUORO-5-(R)-(3-(S)-(8-FLUORO-1-METHYL-2,4-DIOXO-1,2-DIHYDROQUINAZOLIN-3(4H)-YL)-2-METHYLPHENYL)-2-(S)-(2-HYDROXYPROPAN-2-YL)-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-8-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:410 , GLY A:411 , ARG A:422 , GLY A:423 , GLN A:424 , ALA A:428 , LYS A:430 , THR A:474 , GLU A:475 , TYR A:476 , MET A:477 , ALA A:478 , GLY A:480 , CYS A:481 , ASN A:484 , ARG A:525 , LEU A:528 , HOH A:836 , HOH A:853 , HOH A:883 , HOH A:885 , HOH A:900binding site for residue 73T A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T18)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:468 -Pro A:469

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T18)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T18)

(-) Exons   (0, 0)

(no "Exon" information available for 5T18)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh...eeeeee..eeeeeeee...eeeeeeee.....hhhhhhhhhhhhhh........eeeee.....eeeeee.....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh.hhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t18 A 394 HMEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEE 658
                                   403       413       423       433       443       453       463       473       483    || 497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657 
                                                                                                                        488|                                                                                                                                                                     
                                                                                                                         493
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T18)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T18)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T18)

(-) Gene Ontology  (49, 49)

Asymmetric/Biological Unit(hide GO term definitions)

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  5t18
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  BTK_HUMAN | Q06187
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BTK_HUMAN | Q06187: 1aww 1awx 1b55 1btk 1bwn 1k2p 1qly 2ge9 2z0p 3gen 3k54 3ocs 3oct 3p08 3pix 3piy 3piz 3pj1 3pj2 3pj3 4nwm 4ot5 4ot6 4otf 4otq 4otr 4rfy 4rfz 4rg0 4rx5 4yhf 4z3v 4zly 4zlz 5bpy 5bq0 5fbn 5fbo 5j87 5jrs 5kup 5p9f 5p9g 5p9h 5p9i 5p9j 5p9k 5p9l 5p9m 5u9d 5vgo

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