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(-) Description

Title :  CRYSTAL STRUCTURE OF BRUTON AGAMMAGLOBULINEMIA TYROSINE KINASE COMPLEXED WITH 4-[2-FLUORO-3-(4-OXO -3,4-DIHYDROQUINAZOLIN-3-YL) PHENYL]-7-(2-HYDROXYPROPAN-2-Y L)-9H-CARBAZOLE-1-CARBOXAMIDE
 
Authors :  J. K. Muckelbauer
Date :  06 May 16  (Deposition) - 31 Aug 16  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.97
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Kinase, Btk, Protein Inhibitor Complex, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. V. De Lucca, Q. Shi, Q. Liu, D. G. Batt, M. Beaudoin Bertrand, R. Rampulla, A. Mathur, L. Discenza, C. D'Arienzo, J. Dai, M. Obermeier, R. Vickery, Y. Zhang, Z. Yang, P. Marathe, A. J. Tebben, J. K. Muckelbauer, C. J. Chang, H. Zhang, K. Gillooly, T. Taylor, M. A. Pattoli, S. Skala, D. W. Kukral, K. W. Mcintyre, L. Salter-Cid, A. Fura, J. R. Burke, J. C. Barrish, P. H. Carter, J. A. Tino
Small Molecule Reversible Inhibitors Of Bruton'S Tyrosine Kinase (Btk): Structure-Activity Relationships Leading To The Identification Of 7-(2-Hydroxypropan-2-Yl)-4-[2-Methyl-3-(4-Oxo-3, 4-Dihydroquinazolin-3-Yl)Phenyl]-9H-Carbazole-1-Carboxamide (Bms-935177).
J. Med. Chem. V. 59 7915 2016
PubMed-ID: 27531604  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00722

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE BTK
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN (UNP RESIDUES 396-659
    Gene: BTK, AGMX1, ATK, BPK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR KINASE,BPK,BRUTON TYROSINE KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A 
Biological Unit 3 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
16MV2Ligand/Ion4-[2-FLUORO-3-(4-OXOQUINAZOLIN-3(4H)-YL)PHENYL]-7-(2-HYDROXYPROPAN-2-YL)-9H-CARBAZOLE-1-CARBOXAMIDE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
16MV2Ligand/Ion4-[2-FLUORO-3-(4-OXOQUINAZOLIN-3(4H)-YL)PHENYL]-7-(2-HYDROXYPROPAN-2-YL)-9H-CARBAZOLE-1-CARBOXAMIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
16MV1Ligand/Ion4-[2-FLUORO-3-(4-OXOQUINAZOLIN-3(4H)-YL)PHENYL]-7-(2-HYDROXYPROPAN-2-YL)-9H-CARBAZOLE-1-CARBOXAMIDE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
16MV1Ligand/Ion4-[2-FLUORO-3-(4-OXOQUINAZOLIN-3(4H)-YL)PHENYL]-7-(2-HYDROXYPROPAN-2-YL)-9H-CARBAZOLE-1-CARBOXAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:408 , GLY A:409 , THR A:410 , VAL A:416 , ALA A:428 , THR A:474 , GLU A:475 , TYR A:476 , MET A:477 , ALA A:478 , GLY A:480 , CYS A:481 , ASN A:484 , LEU A:528 , HOH A:4130 , HOH A:4144 , HOH A:4165binding site for residue 6MV A 4000
2AC2SOFTWARELEU B:408 , GLY B:409 , THR B:410 , ALA B:428 , THR B:474 , GLU B:475 , TYR B:476 , MET B:477 , ALA B:478 , GLY B:480 , CYS B:481 , ASN B:484 , LEU B:528 , HOH B:4125 , HOH B:4129 , HOH B:4132 , HOH B:4142 , HOH B:4152binding site for residue 6MV B 4000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JRS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:468 -Pro A:469

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JRS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JRS)

(-) Exons   (0, 0)

(no "Exon" information available for 5JRS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee...eeeeeeee.....hhhhhhhhhhhhhh........eeeee.....eeeeee.....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh.hhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jrs A 395 MEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMD 656
                                   404       414       424       434       444       454       464       474       484   ||  498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648        
                                                                                                                       488|                                                                                                                                                                   
                                                                                                                        493                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee...eeeeeee....hhhhhhhhhhhhhh........eeeee..eeeee.....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jrs B 395 MEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTIFIITEYMANGCLLNYLREFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVM 655
                                   404       414       424       436       446       456       470       480       494       504       514       524       534       544 ||    565       575       585       595       605       615       625       635       645       655
                                                                433|                          465|               488|                                                  546|                                                                                                 
                                                                 436                           470                493                                                   558
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JRS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JRS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JRS)

(-) Gene Ontology  (49, 49)

Asymmetric Unit(hide GO term definitions)

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  5jrs
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  BTK_HUMAN | Q06187
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BTK_HUMAN | Q06187: 1aww 1awx 1b55 1btk 1bwn 1k2p 1qly 2ge9 2z0p 3gen 3k54 3ocs 3oct 3p08 3pix 3piy 3piz 3pj1 3pj2 3pj3 4nwm 4ot5 4ot6 4otf 4otq 4otr 4rfy 4rfz 4rg0 4rx5 4yhf 4z3v 4zly 4zlz 5bpy 5bq0 5fbn 5fbo 5j87 5kup 5p9f 5p9g 5p9h 5p9i 5p9j 5p9k 5p9l 5p9m 5t18 5u9d 5vgo

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