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(-) Description

Title :  FACTOR XIA IN COMPLEX WITH THE INHIBITOR 4-(AMINOMETHYL)-~{N}-[(1~{S})-1-[4-(3-OXIDANYL-1~{H}-INDAZOL-5-YL)PYRIDIN-2-YL]-2-PHENYL-ETHYL]CYCLOHEXANE-1-CARBOXAMIDE
 
Authors :  A. Wei
Date :  23 Nov 15  (Deposition) - 13 Apr 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Serine Protease, Blood Coagulation Factor, Protein Inhibitor Complex, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Corte, T. Fang, D. J. P. Pinto, M. J. Orwat, W. Han, A. R. Rendina, J. M. Luettgen, K. A. Rossi, A. Wei, V. Ramamurthy, J. E. Myers Jr. , S. Sheriff, R. Narayanan, T. Harper, J. J. Zheng, Y. -X. Li, D. A. Seiffert, R. R. Wexler, M. L. Quan
Orally Bioavailable Pyridine And Pyrimidine-Based Factor Xi Inhibitors: Discovery Of The Methyl N-Phenyl Carbamate P2 Prime Group
Bioorg. Med. Chem. V. 24 2257 2016
PubMed-ID: 27073051  |  Reference-DOI: 10.1016/J.BMC.2016.03.062
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COAGULATION FACTOR XIA LIGHT CHAIN
    Chains: A
    EC Number: 3.4.21.27
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET14B
    Expression System Strain: DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: F11
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FXI,PLASMA THROMBOPLASTIN ANTECEDENT,PTA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
15SS1Ligand/Ion4-(AMINOMETHYL)-~{N}-[(1~{S})-1-[4-(3-OXIDANYL-1~{H}-INDAZOL-5-YL)PYRIDIN-2-YL]-2-PHENYL-ETHYL]CYCLOHEXANE-1-CARBOXAMIDE
2EDO7Ligand/Ion1,2-ETHANEDIOL
3SO42Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:39 , HIS A:40 , LEU A:41 , CYS A:42 , HIS A:57 , TYR A:143 , ILE A:151 , ASP A:189 , ALA A:190 , CYS A:191 , LYS A:192 , GLY A:193 , SER A:195 , THR A:213 , GLY A:218 , EDO A:308 , EDO A:310 , HOH A:454 , HOH A:501 , HOH A:509binding site for residue 5SS A 301
02AC2SOFTWAREARG A:170 , ARG A:184Bbinding site for residue SO4 A 302
03AC3SOFTWAREVAL A:23 , ARG A:24 , GLY A:25 , GLU A:26 , TRP A:27 , ILE A:70 , LEU A:71 , LEU A:155 , HOH A:405 , HOH A:441binding site for residue SO4 A 303
04AC4SOFTWAREASN A:49 , THR A:111 , VAL A:112 , GLY A:113 , TYR A:114binding site for residue EDO A 304
05AC5SOFTWAREGLN A:73 , SER A:74 , ILE A:151 , ASN A:153 , EDO A:310binding site for residue EDO A 305
06AC6SOFTWAREARG A:24 , SER A:99 , GLY A:173 , LYS A:175 , HOH A:437 , HOH A:465 , HOH A:484binding site for residue EDO A 306
07AC7SOFTWAREHIS A:178binding site for residue EDO A 307
08AC8SOFTWAREGLY A:113 , TYR A:114 , 5SS A:301 , HOH A:418binding site for residue EDO A 308
09AC9SOFTWARESER A:99 , GLY A:100 , TYR A:101 , THR A:177 , LYS A:179binding site for residue EDO A 309
10AD1SOFTWAREHIS A:40 , 5SS A:301 , EDO A:305 , HOH A:469binding site for residue EDO A 310

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:42 -A:58
2A:136 -A:201
3A:168 -A:182
4A:191 -A:219

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:36A-Pro A:36B

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EXL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EXL)

(-) Exons   (0, 0)

(no "Exon" information available for 5EXL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee.....eeeeeeeeee..eeeehhhhhh...hhh.eeee....hhhhh......eeeeeeee.....hhhhh...eeeee................hhhhhh.....eeeee..............eeee..eehhhhhhhhh........eeee................eeeeee..eeeeeeeeee..........eeeee...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5exl A   16 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVGYGDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQAV  245
                                    25        35 ||     43        53     || 61    ||  69        79        89        99       109       119       129       139   ||  150       160       169       179     ||187       197       207       217       227       237        
                                               36A|                    58A|     65A|                                                                           143|                    168A             184A|                                                             
                                                36B                     58B      65B                                                                            145                                      184B
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EXL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EXL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EXL)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA11_HUMAN | P03951: 1xx9 1xxd 1xxf 1zhm 1zhp 1zhr 1zjd 1zlr 1zmj 1zml 1zmn 1zom 1zpb 1zpc 1zpz 1zrk 1zsj 1zsk 1zsl 1ztj 1ztk 1ztl 2f83 2fda 2j8j 2j8l 3bg8 3sor 3sos 4cr5 4cr9 4cra 4crb 4crc 4crd 4cre 4crf 4crg 4d76 4d7f 4d7g 4na7 4na8 4ty6 4ty7 4wxi 4x6m 4x6n 4x6o 4x6p 4y8x 4y8y 4y8z 5e2o 5e2p 5eod 5eok 5exm 5exn 5i25 5q0d 5q0e 5q0f 5q0g 5q0h 5tks 5tkt 5tku

(-) Related Entries Specified in the PDB File

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