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(-) Description

Title :  STRUCTURE OF THE STAR DOMAIN OF T-STAR IN COMPLEX WITH AUUAAA RNA
 
Authors :  C. Dominguez, M. Feracci
Date :  06 Nov 15  (Deposition) - 13 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.03
Chains :  Asym./Biol. Unit :  A,B,E,F
Keywords :  Protein - Rna Complexes Star Protein Alternative Splicing Kh Domain, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Feracci, J. N. Foot, S. N. Grellscheid, M. Danilenko, R. Stehle, O. Gonchar, H. S. Kang, C. Dalgliesh, N. H. Meyer, Y. Liu, A. Lahat, M. Sattler, I. C. Eperon, D. J. Elliott, C. Dominguez
Structural Basis Of Rna Recognition And Dimerization By The Star Proteins T-Star And Sam68.
Nat Commun V. 7 10355 2016
PubMed-ID: 26758068  |  Reference-DOI: 10.1038/NCOMMS10355

(-) Compounds

Molecule 1 - KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION- ASSOCIATED PROTEIN 3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLEICS 03
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RNA BINDING PROTEIN
    Gene: KHDRBS3, SALP, SLM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: N-TERMINUS GA RESIDUES FROM TAG.
    Synonym: RNA-BINDING PROTEIN T-STAR,SAM68-LIKE MAMMALIAN PROTEIN 2, SLM-2,SAM68-LIKE PHOSPHOTYROSINE PROTEIN
 
Molecule 2 - RNA (5'-R(P*AP*UP*UP*AP*AP*A)-3')
    Chains: E, F
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5EMO)

(-) Sites  (0, 0)

(no "Site" information available for 5EMO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EMO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EMO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EMO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EMO)

(-) Exons   (0, 0)

(no "Exon" information available for 5EMO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhh...hhhhhhhhhhh..........eeeeeeee.........hhhhhhhh..hhhhhhhhhhhh.eeeee......hhhhhhhhhhhh...hhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5emo A   5 YLPELMAEKDSLDPSFTHALRLVNQEIEIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYND 161
                                    14        24       |47        57        67        77        87        97       107       117       127       137       147       157    
                                                      32|                                                                                                                   
                                                       46                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...hhhhhhhhhhhhhh...........eeeeeeee.........hhhhhhhh..hhhhhhhhhhhh.eeeee.....................hhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5emo B   2 EEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP 157
                                    11        21        31   ||   50        60        70        80        90       100       110       120       130       140       150       
                                                            35|                                                                                                                
                                                             45                                                                                                                


Chain E from PDB  Type:RNA  Length:6
                                      
                 5emo E   1 AUUAAA   6


Chain F from PDB  Type:RNA  Length:6
                                      
                 5emo F   1 AUUAAA   6
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EMO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EMO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EMO)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  5emo
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KHDR3_HUMAN | O75525: 5el3 5elr 5els 5elt

(-) Related Entries Specified in the PDB File

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