5ELR - JenaLib

Title :   STRUCTURE OF THE KH-QUA2 DOMAIN OF T-STAR IN COMPLEX WITH AAUAAU RNA

Authors :   C. Dominguez, M. Feracci

Date :   05 Nov 15 (Deposition) - 13 Jan 16 (Release) - 27 Jan 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : B,C,D

Keywords :   Protein - Rna Complexes, Star Protein, Alternative Splicing, Kh Domain, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Feracci, J. N. Foot, S. N. Grellscheid, M. Danilenko, R. Stehle, O. Gonchar, H. S. Kang, C. Dalgliesh, N. H. Meyer, Y. Liu, A. Lahat, M. Sattler, I. C. Eperon, D. J. Elliott, C. Dominguez
Structural Basis Of Rna Recognition And Dimerization By The Star Proteins T-Star And Sam68.
Nat Commun V. 7 10355 2016
PubMed-ID: 26758068 | Reference-DOI: 10.1038/NCOMMS10355

Compounds

*Molecule 1 - RNA (5'-R(APAPUPAPAPU)-3')*
	Chains	:	B
	Engineered	:	YES
	Fragment	:	RNA BINDING PROTEIN
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synthetic	:	YES

Molecule 2 - KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION- ASSOCIATED PROTEIN 3
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 50-183
	Gene	:	KHDRBS3, SALP, SLM2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	N-TERMINUS GA RESIDUES FROM TAG.
	Synonym	:	T-STAR KH - QUA2, RNA-BINDING PROTEIN T-STAR,SAM68-LIKE MAMMALIAN PROTEIN 2,SLM-2,SAM68-LIKE PHOSPHOTYROSINE PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain B from PDB  Type:RNA  Length:5
                                     
                 5elr B   4 AUAAU   8

Chain C from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.........hhhhhhhh..hhhhhhhhhhhh.eeeee......hhhhhhhhhhh....hhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 5elr C  48 GAINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPD 158
                                    57        67        77        87        97       107       117       127       137       147       157

Chain D from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee.........hhhhhhhh...hhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhh...eeeeeeeehhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5elr D  50 INKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEI 163
                                    59        69        79        89        99       109       119       129       139       149       159

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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