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(-) Description

Title :  STRUCTURE OF THE KH DOMAIN OF T-STAR
 
Authors :  C. Dominguez, M. Feracci
Date :  04 Nov 15  (Deposition) - 13 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.59
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Protein - Rna Complexes Star Proteins Kh - Domain Alternative Splicing, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Feracci, J. N. Foot, S. N. Grellscheid, M. Danilenko, R. Stehle, O. Gonchar, H. S. Kang, C. Dalgliesh, N. H. Meyer, Y. Liu, A. Lahat, M. Sattler, I. C. Eperon, D. J. Elliott, C. Dominguez
Structural Basis Of Rna Recognition And Dimerization By The Star Proteins T-Star And Sam68.
Nat Commun V. 7 10355 2016
PubMed-ID: 26758068  |  Reference-DOI: 10.1038/NCOMMS10355

(-) Compounds

Molecule 1 - KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION- ASSOCIATED PROTEIN 3
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLEICS 03
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RNA BINDING PROTEIN, RESIDUES 50-160
    Gene: KHDRBS3, SALP, SLM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: N-TERMINUS GA FROM TAG.
    Synonym: RNA-BINDING PROTEIN T-STAR,SAM68-LIKE MAMMALIAN PROTEIN 2, SLM-2,SAM68-LIKE PHOSPHOTYROSINE PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric Unit (2, 17)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:80 , SER A:83 , ARG A:86 , HOH A:322 , HOH A:328binding site for residue SO4 A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EL3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EL3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EL3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EL3)

(-) Exons   (0, 0)

(no "Exon" information available for 5EL3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee.........hhhhhhhh...hhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 5el3 A  53 NmKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKmSILGKGSmRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARmGHALEEIKKFLIPDYN 160
                             |      62        72        82        92  |    102|      112       122       132       142 |     152        
                             |                                       95-MSE 103-MSE                                  144-MSE            
                            54-MSE                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.........hhhhhhhh...hhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 5el3 B  48 GAINKNmKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKmSILGKGSmRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARmGHALEEIKKFLIPDYN 160
                                  | 57        67        77        87       |97     | 107       117       127       137      |147       157   
                                 54-MSE                                   95-MSE 103-MSE                                  144-MSE            


Chain C from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.........hhhhhhhh..hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 5el3 C  48 GAINKNmKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKmSILGKGSmRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARmGHALEEIKKFLIPDYN 160
                                  | 57        67        77        87       |97     | 107       117       127       137      |147       157   
                                 54-MSE                                   95-MSE 103-MSE                                  144-MSE            


Chain D from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.........hhhhhhhh..hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 5el3 D  48 GAINKNmKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKmSILGKGSmRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARmGHALEEIKKFLIPDYN 160
                                  | 57        67        77        87       |97     | 107       117       127       137      |147       157   
                                 54-MSE                                   95-MSE 103-MSE                                  144-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EL3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EL3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EL3)

(-) Gene Ontology  (9, 9)

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  5el3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KHDR3_HUMAN | O75525: 5elr 5els 5elt 5emo

(-) Related Entries Specified in the PDB File

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