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(-) Description

Title :  STRUCTURE OF THE QUA1-KH DOMAIN OF T-STAR IN COMPLEX WITH UAAU RNA
 
Authors :  C. Dominguez, M. Feracci
Date :  05 Nov 15  (Deposition) - 13 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.13
Chains :  Asym./Biol. Unit :  A,B,E,F
Keywords :  Protein - Rna Complexes Star Protein Alternative Splicing Kh Domain, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Feracci, J. N. Foot, S. N. Grellscheid, M. Danilenko, R. Stehle, O. Gonchar, H. S. Kang, C. Dalgliesh, N. H. Meyer, Y. Liu, A. Lahat, M. Sattler, I. C. Eperon, D. J. Elliott, C. Dominguez
Structural Basis Of Rna Recognition And Dimerization By The Star Proteins T-Star And Sam68.
Nat Commun V. 7 10355 2016
PubMed-ID: 26758068  |  Reference-DOI: 10.1038/NCOMMS10355

(-) Compounds

Molecule 1 - KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION- ASSOCIATED PROTEIN 3
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLEICS 03
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RNA BINDING PROTEIN, UNP RESIDUES 1-160
    Gene: KHDRBS3, SALP, SLM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: N-TERMINUS GA RESIDUES FROM TAG.
    Synonym: RNA-BINDING PROTEIN T-STAR,SAM68-LIKE MAMMALIAN PROTEIN 2, SLM-2,SAM68-LIKE PHOSPHOTYROSINE PROTEIN
 
Molecule 2 - RNA (5'-R(P*UP*AP*AP*U)-3')
    Chains: E, F
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5ELT)

(-) Sites  (0, 0)

(no "Site" information available for 5ELT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ELT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ELT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ELT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ELT)

(-) Exons   (0, 0)

(no "Exon" information available for 5ELT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...hhhhhhhhhhhhhh...ee......eeeeeeee.........hhhhhhhh..hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5elt A   4 KYLPELMAEKDSLDPSFTHALRLVNQEIEKFKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPD 158
                                    13        23        33||      52        62        72        82        92       102       112       122       132       142       152      
                                                         34|                                                                                                                  
                                                          44                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..ee.......eeeeeeee.........hhhhhhhh..hhhhhhhhhhhh.eeeee......hhhhhhhh.......hhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5elt B  -1 GAMEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLI 156
                                     8        18        28       |44        54        64        74        84        94       104       114       124       134       144       154  
                                                                36|                                                                                                                 
                                                                 43                                                                                                                 


Chain E from PDB  Type:RNA  Length:4
                                    
                 5elt E   0 UAAU   3


Chain F from PDB  Type:RNA  Length:4
                                    
                 5elt F   1 UAAU   4
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ELT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ELT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ELT)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KHDR3_HUMAN | O75525: 5el3 5elr 5els 5emo

(-) Related Entries Specified in the PDB File

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