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(-) Description

Title :  TGF-BETA RECEPTOR TYPE 1 KINASE DOMAIN (T204D)
 
Authors :  S. Sheriff
Date :  14 Oct 15  (Deposition) - 11 May 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Alk5, Sb431542, Kinase Domain, Transferase-Transferase Inhibitor Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Tebben, M. Ruzanov, M. Gao, D. Xie, S. E. Kiefer, C. Yan, J. A. Newitt, L. Zhang, K. Kim, L. Hao, L. M. Kopcho, S. Sheriff
Crystal Structures Of Apo And Inhibitor-Bound Tgfbetar2 Kinase Domain: Insights Into Tgfbetar Isoform Selectivity
Acta Crystallogr. , Sect. D V. 72 658 2016
PubMed: search  |  Reference-DOI: 10.1107/S2059798316003624

(-) Compounds

Molecule 1 - TGF-BETA RECEPTOR TYPE-1
    Chains: A
    EC Number: 2.7.11.30
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC1
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Fragment: KINASE DOMAIN, UNP RESIDUES 200-503
    Gene: TGFBR1, ALK5, SKR4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TGFR-1,ACTIVIN A RECEPTOR TYPE II-LIKE PROTEIN KINASE OF 53KD,ACTIVIN RECEPTOR-LIKE KINASE 5,ALK5,SERINE/THREONINE-PROTEIN KINASE RECEPTOR R4,SKR4,TGF-BETA TYPE I RECEPTOR,TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I,TBETAR-I

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:253 , ASP A:269 , GLY A:271 , THR A:272 , TRP A:273 , HOH A:728binding site for residue GOL A 601
2AC2SOFTWAREILE A:211 , ALA A:230 , ASP A:281 , HIS A:283 , GLY A:286 , LEU A:340binding site for residue GOL A 602
3AC3SOFTWARELYS A:449 , ARG A:451 , TYR A:476 , ALA A:477 , HOH A:701 , HOH A:703 , HOH A:710 , HOH A:764binding site for residue GOL A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E8T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E8T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E8T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E8T)

(-) Exons   (0, 0)

(no "Exon" information available for 5E8T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee..eeeeeeeehhhhhhhhhhhhhhhh...........eeeeeeee....eeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..........ee....hhh.eee.....eee.hhhhheeee....ee.........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e8t A 198 HMTIARDIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 499
                                   207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E8T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E8T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E8T)

(-) Gene Ontology  (99, 99)

Asymmetric/Biological Unit(hide GO term definitions)

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  5e8t
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  TGFR1_HUMAN | P36897
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  2.7.11.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TGFR1_HUMAN | P36897: 1b6c 1ias 1py5 1rw8 1tbi 1vjy 2l5s 2pjy 2wot 2wou 2x7o 3faa 3gxl 3hmm 3kcf 3kfd 3tzm 4x0m 4x2f 4x2g 4x2j 4x2k 4x2n 5e8s 5e8u 5e8w 5e8x 5e8z 5e90 5fri 5usq

(-) Related Entries Specified in the PDB File

5e8s 5e8u 5e8v 5e8w 5e8x 5e8y 5e8z 5e90 5e91 5e92