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(-) Description

Title :  TGF-BETA RECEPTOR TYPE 2 KINASE DOMAIN (E431A,R433A,E485A,K488A,R493A, R495A) IN COMPLEX WITH AMPPNP
 
Authors :  S. Sheriff
Date :  14 Oct 15  (Deposition) - 11 May 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase Domain, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. J. Tebben, M. Ruzanov, M. Gao, D. Xie, S. E. Kiefer, C. Yan, J. A. Newitt, L. Zhang, K. Kim, L. Hao, L. M. Kopcho, S. Sheriff
Crystal Structures Of Apo And Inhibitor-Bound Tgfbetar2 Kinase Domain: Insights Into Tgfbetar Isoform Selectivity
Acta Crystallogr. , Sect. D V. 72 658 2016
PubMed: search  |  Reference-DOI: 10.1107/S2059798316003624

(-) Compounds

Molecule 1 - TGF-BETA RECEPTOR TYPE-2
    ChainsA
    EC Number2.7.11.30
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System PlasmidPFASTBAC1
    Expression System StrainFALL ARMYWORM
    Expression System Taxid7108
    Expression System Vector TypePLASMID
    FragmentKINASE DOMAIN, UNP RESIDUES 237-549
    GeneTGFBR2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTGFR-2,TGF-BETA TYPE II RECEPTOR,TRANSFORMING GROWTH FACTOR- BETA RECEPTOR TYPE II,TBETAR-II

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:251 , GLY A:253 , ARG A:254 , PHE A:255 , ALA A:256 , VAL A:258 , ALA A:275 , LYS A:277 , LEU A:305 , THR A:325 , ALA A:326 , PHE A:327 , HIS A:328 , ASN A:332 , ASP A:379 , LYS A:381 , SER A:383 , ASN A:384 , LEU A:386 , ASP A:397 , MG A:602 , MG A:603 , HOH A:723 , HOH A:726 , HOH A:739 , HOH A:740binding site for residue ANP A 601
2AC2SOFTWAREASN A:384 , ASP A:397 , ANP A:601 , MG A:603 , HOH A:739binding site for residue MG A 602
3AC3SOFTWAREASP A:397 , ANP A:601 , MG A:602 , HOH A:721 , HOH A:740binding site for residue MG A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E92)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:415 -Ser A:416

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E92)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E92)

(-) Exons   (0, 0)

(no "Exon" information available for 5E92)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee....eeeeeee...eeeeeeee..hhhhhhhhhhhhhh..........eeeeeeeee..eeeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...........ee....hhh.eee.....eee......ee.....hhhhhhh.....hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e92 A 240 ELLPIELDTLVGKGRFAEVYKAKLKFETVAVKIFPYEEYASWKTEKDIFSDINLKHENILQFLTAEERKTELGKQYWLITAFHAKGNLQEYLTRHVISWEDLRKLGSSLARGIAHLHSDHTPCGRPKMPIVHRDLKSSNILVKNDLTCCLCDFGLSLRLDPTLSVDDLANSGQVGTARYMAPEVLASAMNLENVESFKQTDVYSMALVLWEMTSRCNAVGEVKDYEPPFGSKVREHPCVASMADNVLADAGRPEIPSFWLNHQGIQMVCETLTECWDHDPEARLTAQCVAERFSELEH 543
                                   249       259    || 275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535        
                                                  264|                                                                                                                                                                                                                                                                                
                                                   271                                                                                                                                                                                                                                                                                

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E92)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E92)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E92)

(-) Gene Ontology  (103, 103)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:415 - Ser A:416   [ RasMol ]  
 

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  2.7.11.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TGFR2_HUMAN | P371731ktz 1m9z 1plo 2pjy 3kfd 4p7u 4xjj 5e8v 5e8y 5e91 5tx4 5ty4

(-) Related Entries Specified in the PDB File

5e8s 5e8t 5e8u 5e8v 5e8w 5e8x 5e8y 5e8z 5e90 5e91