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(-) Description

Title :  CRYSTAL STRUCTURE OF PVX_084705 IN COMPLEX WITH AMP-PNP
 
Authors :  J. R. Walker, M. El Bakkouri, P. Loppnau, S. Graslund, H. He, A. Seitova A. Hutchinson, C. Bountra, A. M. Edwards, C. H. Arrowsmith, R. Hui, M. A Structural Genomics Consortium (Sgc)
Date :  25 Sep 15  (Deposition) - 14 Oct 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics Consortium (Sgc), Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Walker, M. El Bakkouri, P. Loppnau, S. Graslund, H. He, A. Seitova, A. Hutchinson, C. Bountra, A. M. Edwards, C. H. Arrowsmith R. Hui, M. Amani, Structural Genomics Consortium (Sgc)
Crystal Structure Of Pvx_084705 In Complex With Amp-Pnp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CGMP-DEPENDENT PROTEIN KINASE, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFBOH-MHL
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Gene: PVX_084705
    Organism Scientific: PLASMODIUM VIVAX (STRAIN SALVADOR I)
    Organism Taxid: 126793
    Strain: SALVADOR I

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2CL3Ligand/IonCHLORIDE ION
3NA1Ligand/IonSODIUM ION
4UNX7Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2CL-1Ligand/IonCHLORIDE ION
3NA-1Ligand/IonSODIUM ION
4UNX14Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:540 , GLY A:541 , GLY A:543 , VAL A:548 , ALA A:561 , LYS A:563 , THR A:611 , GLU A:612 , VAL A:614 , GLU A:618 , LEU A:664 , ASP A:675 , ALA A:816 , NA A:1006binding site for residue ANP A 1001
2AC2SOFTWARESER A:446 , ARG A:447 , ARG A:485 , HOH A:1122binding site for residue CL A 1003
3AC3SOFTWAREGLU A:175 , ALA A:176binding site for residue CL A 1004
4AC4SOFTWAREVAL A:306binding site for residue CL A 1005
5AC5SOFTWAREASN A:662 , ASP A:675 , ANP A:1001binding site for residue NA A 1006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DZC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DZC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DZC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DZC)

(-) Exons   (0, 0)

(no "Exon" information available for 5DZC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:816
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhee....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhheeee....ee......ee.eeeeeee..eeeee..eeeeee....ee.hhhhhh.ee...eeee....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..eeeee....eee.......eeeeeee..eeeee..eeeeee....eehhhhhhh......eeee...eeeeeeehhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhheeeee....eeee...eeeeeeee..eeeee..eeeeee....eehhhhhhh......eeeee...eeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhh.eeeee....eee.......eeeeeee..eeeee..eeeeee....eehhhhhh.......eeee....eeeeeeehhhhhh..hhhhhhhhhhhhhhhhh..hhh.eeeeeeee....eeeeeeee.....eeeeeeeehhhhhhh.hhhhhhhhhhhhhhh.......eeeee....eeeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee..........hhhhhhhhhhh......hhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.......hhhhhhhhhhh..hhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5dzc A   0 GMRCNEKKKAIFSNSGEDTLMEDHLQLREKLSEDIEMIKASLKNNLVCSTLNDNEILTLSNYMQFFVFKGGDLVIKQGEKGSYFFIINSGKFDVYVNDKKVKSMGKGSSFGEAALIHNTQRSATIMAETDGTLWGVQRSTFRATLKQLSNRNFNENRSFIDSVSVFDMLTEAQKNMITNACVIQMFKPGETIVKQGDYGDVLFILKEGKATVFINDKEIRVLNKGSYFGERALLYDEPRSATIIAKEPTACASICRKLLNIVLGNLQVVLFRNIMTEALQQSEIFRQFSAEQLNDLADTAIVRDYPANYHILHKKSVKYLIVLEGKVELFLDDESIGILTRGKSFGDQYVLNQKQKFRHTVKSLDVCKIALITESCLADCLGDNNIDASIDHNNKKSIIKKMYIFRYLSEQQCNLLIEAFRTTRYEEGDYIIQEGEVGSRFYIIKNGEVEVTKNGKRLRTLGKNDYFGERALLYDEPRTASIISKATSVECWFVDKSVFLQIIQGPMLTHLEERIKMQDTKVEMHELETERIIGRGTFGTVKLVHHKPTQIRYALKCVSKRSIISLNQQNNIKLEREITAENDHPFIIRLVRTFKDSNCFYFLTELVTGGELYDAIRKLGLLSKPQAQFYLGSIILAIEYLHERNIVYRDLKPENILLDKQGYVKLIDFGCAKKIQGRAYTLVGTPHYMAPEVILGKGYGCTVDIWALGVCLYEFICGPLPFGNDQEDQLEIFRDILTGQLTFPDYVSDQDSINLMKRLLCRLPQGRIGCSINGFKDIKEHAFFGNFNWDKLAGRLLEPPLVSKGETYAEDIDSWD 844
                                 || 11   ||   24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314   ||  327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817 ||   
                                 5|     15|                                                                                                                                                                                                                                                                                                        318|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              819|   
                                  8      19                                                                                                                                                                                                                                                                                                         322                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               841
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DZC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DZC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DZC)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  5dzc
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A5K0N4_PLAVS | A5K0N4: 5ezr
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        A5K0N4_PLAVS | A5K0N4: 4rz7 5dyl 5f0a 5fet

(-) Related Entries Specified in the PDB File

4myi 4MYI CONTAINS THE SAME PROTEIN BUT WITHOUT LIGAND.
4wjc 4WJC CONTAINS THE SAME PROTEIN, BUT WITH A DIFFERENT INHIBITOR BOUND.