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(-) Description

Title :  CRYSTAL STRUCTURE OF PVX_084705 IN PRESENCE OF COMPOUND 2
 
Authors :  A. K. Wernimont, W. Tempel, J. R. Walker, H. He, A. Seitova, T. Hills, A. M D. A. Baker, C. Flueck, C. A. Kettleborough, C. H. Arrowsmith, A. M. Edw C. Bountra, R. Hui, A. Hutchinson, M. El Bakkouri, Structural Genom Consortium (Sgc)
Date :  17 Dec 15  (Deposition) - 13 Jan 16  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Agc Kinase, Pkg, Structural Genomics, Malaria, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, W. Tempel, J. R. Walker, H. He, A. Seitova, T. Hills, A. M. Neculai, D. A. Baker, C. Flueck, C. A. Kettleborough, C. H. Arrowsmith, A. M. Edwards, C. Bountra, R. Hui, A. Hutchinson, M. El Bakkouri
Crystal Structure Of Pvx_084705 In Presence Of Compound 2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CGMP-DEPENDENT PROTEIN KINASE, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Gene: PVX_084705
    Organism Scientific: PLASMODIUM VIVAX (STRAIN SALVADOR I)
    Organism Taxid: 126793
    Strain: SALVADOR I

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11TR1Ligand/Ion4-[7-[(DIMETHYLAMINO)METHYL]-2-(4-FLUOROPHENYL)IMIDAZO[1,2-A]PYRIDIN-3-YL]PYRIMIDIN-2-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:540 , VAL A:548 , ALA A:561 , ILE A:595 , PHE A:609 , THR A:611 , GLU A:612 , VAL A:614 , GLU A:618 , GLU A:661 , LEU A:664 , ILE A:674binding site for residue 1TR A 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FET)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FET)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FET)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FET)

(-) Exons   (0, 0)

(no "Exon" information available for 5FET)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:802
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhhhhhh.eeee.....eee....ee.eeeeeee..eeee....eeeee....ee.hhhhhh.ee...eeee....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh.eeeee....eee.......eeeeeee..eeeee..eeeeee....eehhhhhhh......eeee...eeeeeeehhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.eeeee....eee.......eeeeeeee..eeeee..eeeeee....eehhhhhhh......eeeee...eeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhh.eeeee....eee.......eeeeeee..eeee....eeeee....eehhhhhh.......eeee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee...eeeeeee.....eeeeeeehhhhhhhhh..hhhhhhhhhhhhh.......eee.....eeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee..........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhh..........hhhhhhhhhhhh..............hhhhhhhhhhh..hhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fet A   2 RCNEKKAIFGEDTLMEDHLQLREKLSEDIEMIKASLKNNLVCSTLNDNEILTLSNYMQFFVFKGGDLVIKQGEKGSYFFIINSGKFDVYVNDKKVKSMGKGSSFGEAALIHNTQRSATIMAETDGTLWGVQRSTFRATLKQLSNRNFNENRSFIDSVSVFDMLTEAQKNMITNACVIQMFKPGETIVKQGDYGDVLFILKEGKATVFINDKEIRVLNKGSYFGERALLYDEPRSATIIAKEPTACASICRKLLNIVLGNLQVVLFRNIMTEALQQSEIFRQFSAEQLNDLADTAIVRDYPANYHILHKDKVKSVKYLIVLEGKVELFLDDESIGILTRGKSFGDQYVLNQKQKFRHTVKSLDVCKIALITESCLADCLGDNNIDASIDHNNKKSIIKKMYIFRYLSEQQCNLLIEAFRTTRYEEGDYIIQEGEVGSRFYIIKNGEVEVTKNGKRLRTLGKNDYFGERALLYDEPRTASIISKATSVECWFVDKSVFLQIIQGPMLTHLEERIKMQDTKVEMHELETERIIGRGGTVKLVHHKPTQIRYALKCVSKRSIISLNQQNNIKLEREITAENDHPFIIRLVRTFKDCFYFLTELVTGGELYDAIRKLGLLSKPQAQFYLGSIILAIEYLHERNIVYRDLKPENILLDKQGYVKLIDFGCAKKIQGRAYTLVGTPHYMAPEVILGKGYGCTVDIWALGVCLYEFICGPLPFGNDQEDQLEIFRDILTGQLTFPDYVSDQDSINLMKRLLCRLPQGRIGCSINGFKDIKEHAFFGNFNWDKLAGRLLEPPLVSKGETYA 816
                               ||   20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540  ||   552       562       572       582       592       602||     614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814  
                               5|  13|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        543|                                                      603|                                                                                                                                                                                                                  
                                9   20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         546                                                       606
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FET)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FET)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FET)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A5K0N4_PLAVS | A5K0N4: 5ezr
UniProtKB/TrEMBL
        A5K0N4_PLAVS | A5K0N4: 4rz7 5dyl 5dzc 5f0a

(-) Related Entries Specified in the PDB File

5f0a