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(-) Description

Title :  CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF MOUSE ERF1 IN COMPLEX WITH RNASE H DOMAIN OF RT OF MOLONEY MURINE LEUKEMIA VIRUS
 
Authors :  X. Tang, H. Song
Date :  09 Sep 15  (Deposition) - 06 Jul 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Erf1, Rt, Complex, Hydrolase-Translation Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Tang, Y. Zhu, S. L. Baker, M. W. Bowler, B. J. Chen, C. Chen, J. R. Hogg, S. P. Goff, H. Song
Structural Basis Of Suppression Of Host Translation Termination By Moloney Murine Leukemia Virus
Nat Commun V. 7 12070 2016
PubMed-ID: 27329342  |  Reference-DOI: 10.1038/NCOMMS12070

(-) Compounds

Molecule 1 - REVERSE TRANSCRIPTASE/RIBONUCLEASE H P80
    Chains: A
    EC Number: 3.1.26.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RNASE H DOMAIN, UNP RESIDUES 1159-1330
    Organism Common: MOMLV
    Organism Scientific: MOLONEY MURINE LEUKEMIA VIRUS (ISOLATE SHINNICK)
    Organism Taxid: 928306
    Strain: ISOLATE SHINNICK
    Synonym: RT
 
Molecule 2 - EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL RESIDUES 276-437
    Gene: ETF1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ERF1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DMR)

(-) Sites  (0, 0)

(no "Site" information available for 5DMR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DMR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly B:386 -Ala B:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DMR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DMR)

(-) Exons   (0, 0)

(no "Exon" information available for 5DMR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeee..ee...eeeeeee....eeeeee.....hhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhh......hhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dmr A 507 PDLTDQPLPDADHTWYTDGSSLLQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEEIKNKDEILALLKALFLPKRLSIIHCPHSAEARGNRMADQAARKAAITETPD 666
                                   516       526   ||  539       549       559       569       579       589      |612       622       632   ||  647       657         
                                                 530|                                                           596|                       636|                        
                                                  534                                                            610                        642                        


Chain B from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh....eeehhhhhhhhhhh..eeeeeee.....eeeeee......eeeeee..eeeeeehhhhhhhhhhhh..eeeee...hhhhhhhhhhhh.eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dmr B 281 IQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 420
                                   290       300       310       320       330       340      |369       379       389       399       409       419 
                                                                                            347|                                                     
                                                                                             367
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DMR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DMR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DMR)

(-) Gene Ontology  (43, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly B:386 - Ala B:387   [ RasMol ]  
 

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 Databases and Analysis Tools

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  5dmr
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  ERF1_MOUSE | Q8BWY3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
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  POL_MLVMS | P03355
    Comparative Protein Structure Models: ModBase
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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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  3.1.26.4
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  ERF1_MOUSE | Q8BWY3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERF1_MOUSE | Q8BWY3: 5dmq
        POL_MLVMS | P03355: 1d0e 1d1u 1i6j 1mml 1n4l 1nnd 1qai 1qaj 1ztt 1ztw 2fjv 2fjw 2fjx 2fvp 2fvq 2fvr 2fvs 2hb5 2m9u 2mqv 2ms0 2ms1 2r2r 2r2s 2r2t 2r2u 3fsi 3nnq 4m94 4m95 4mh8 4nzg 4xo0 4xpc 4xpe 5dmq

(-) Related Entries Specified in the PDB File

5dmq