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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE ERF1 IN COMPLEX WITH REVERSE TRANSCRIPTASE (RT) OF MOLONEY MURINE LEUKEMIA VIRUS
 
Authors :  T. Tang, H. Song
Date :  09 Sep 15  (Deposition) - 06 Jul 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Complex, Erf1, Rt, Transferase, Hydrolase-Translation Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Tang, Y. Zhu, S. L. Baker, M. W. Bowler, B. J. Chen, C. Chen, J. R. Hogg, S. P. Goff, H. Song
Structural Basis Of Suppression Of Host Translation Termination By Moloney Murine Leukemia Virus
Nat Commun V. 7 12070 2016
PubMed-ID: 27329342  |  Reference-DOI: 10.1038/NCOMMS12070

(-) Compounds

Molecule 1 - REVERSE TRANSCRIPTASE/RIBONUCLEASE H P80
    Chains: A
    EC Number: 2.7.7.49, 2.7.7.7, 3.1.26.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: MOMLV
    Organism Scientific: MOLONEY MURINE LEUKEMIA VIRUS (ISOLATE SHINNICK)
    Organism Taxid: 928306
    Strain: ISOLATE SHINNICK
    Synonym: RT
 
Molecule 2 - EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ETF1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ERF1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DMQ)

(-) Sites  (0, 0)

(no "Site" information available for 5DMQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DMQ)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ile A:593 -His A:594
2His A:594 -Gly A:595
3Gly A:637 -His A:638
4Lys A:640 -Gly A:641
5Gly B:386 -Ala B:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DMQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DMQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5DMQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:609
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.....................................hhhhhhhhhhhhhhhhhh..eee.........eee.....eee..hhhhhhhh........hhhhhhh........eeeee...hhhhh.....hhhhhheee........eeeee........hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee..hhhhhhhhhhhhhhhhhhhh........eeee.eeee..eeee..eeeehhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...ee.......eeeeeeee..eeeeeeeeee..eeeeee..eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhhh...ee................hhhhhhhhhhh...ee.......................................eeeeeee..........eeeee......eeee.......hhhhhhhhhhhhhh......eeee.hhhhhhhhh.........hhhhhhhhhhhh......eee...........hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dmq A  24 TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPARMTHYQALLLDTDRVQFGPVVALNPATLLPLPEELAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAITE 663
                                    33        43        53        63        73        83        93       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326  ||   338       348       358       368       378       388       398       408       418       428       438       448|      464       474       484    || 503       513       523       533       543       553       563       573       583       593     ||614       624       634       644       654         
                                                                                                        102|                                                                                                                                                                                                                            329|                                                                                                                 448|                               489|                                                                                                 599|                                                    
                                                                                                         106                                                                                                                                                                                                                             332                                                                                                                  455                                499                                                                                                  611                                                    


Chain B from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh......ee..ee....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh........eeeeeeeeee..eeeee..eee............ee....hhhhhh.......eeeeee...eeeeeee....eeeeeeee................hhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee..hhhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhh....eeeee........ee.......ee.........hhhhhhhhhh.....eeeee...hhhhhhhhhhhh.eeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dmq B   5 PSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 420
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344    || 375       385       395       405       415     
                                                                                                                                                                                                                                                                                                                                                                                  349|                                                 
                                                                                                                                                                                                                                                                                                                                                                                   371
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DMQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DMQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DMQ)

(-) Gene Ontology  (43, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5dmq)
 
  Cis Peptide Bonds
    Gly A:637 - His A:638   [ RasMol ]  
    Gly B:386 - Ala B:387   [ RasMol ]  
    His A:594 - Gly A:595   [ RasMol ]  
    Ile A:593 - His A:594   [ RasMol ]  
    Lys A:640 - Gly A:641   [ RasMol ]  
 

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  5dmq
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  ERF1_MOUSE | Q8BWY3
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  POL_MLVMS | P03355
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  2.7.7.49
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  2.7.7.7
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
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  3.1.26.4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERF1_MOUSE | Q8BWY3: 5dmr
        POL_MLVMS | P03355: 1d0e 1d1u 1i6j 1mml 1n4l 1nnd 1qai 1qaj 1ztt 1ztw 2fjv 2fjw 2fjx 2fvp 2fvq 2fvr 2fvs 2hb5 2m9u 2mqv 2ms0 2ms1 2r2r 2r2s 2r2t 2r2u 3fsi 3nnq 4m94 4m95 4mh8 4nzg 4xo0 4xpc 4xpe 5dmr

(-) Related Entries Specified in the PDB File

5dmr