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(-) Description

Title :  CRYSTAL STRUCTURE OF 5'-CTTATPPTAZZATAAG IN A HOST-GUEST COMPLEX
 
Authors :  M. M. Georgiadis, I. Singh
Date :  16 Jan 15  (Deposition) - 27 May 15  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,G
Keywords :  Host-Guest Complex, B-Dna, Non-Natural Nucleobase Pair, Synthetic Biology, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. M. Georgiadis, I. Singh, W. F. Kellett, S. Hoshika, S. A. Benner, N. G. Richards
Structural Basis For A Six Nucleotide Genetic Alphabet.
J. Am. Chem. Soc. V. 137 6947 2015
PubMed-ID: 25961938  |  Reference-DOI: 10.1021/JACS.5B03482

(-) Compounds

Molecule 1 - REVERSE TRANSCRIPTASE
    Chains: A
    EC Number: 2.7.7.49, 2.7.7.7, 3.1.26.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 683-937
    Gene: GAG-POL
    Organism Common: MOMLV
    Organism Scientific: MOLONEY MURINE LEUKEMIA VIRUS (ISOLATE SHINNICK)
    Organism Taxid: 928306
    Strain: ISOLATE SHINNICK
    Synonym: PR180GAG-POL
 
Molecule 2 - DNA (5'-D(*CP*TP*TP*AP*TP*(1WA)P*(1WA)P*T)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(P*AP*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3')
    Chains: G
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
11W52Mod. Nucleotide(1R)-1-(6-AMINO-2-HYDROXY-5-NITROPYRIDIN-3-YL)-1,4-ANHYDRO-2-DEOXY-5-O-PHOSPHONO-D-ERYTHRO-PENTITOL
21WA2Mod. Nucleotide2-AMINO-8-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-4-HYDROXY-1H-IMIDAZO[1,2-A][1,3,5]TRIAZINE-5,8-DIIUM

(-) Sites  (0, 0)

(no "Site" information available for 4XO0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XO0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XO0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XO0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XO0)

(-) Exons   (0, 0)

(no "Exon" information available for 4XO0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...hhhhhh............................hhhhhhhhhhhhhhhhhh..eeee.......eee...eee.hhhhhh..........hhhhhhh.......eeeeee...hhhhh.....hhhhhheeeeehhhheeeeeee........hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeeee.hhhhhhhhhhhhhhhhhhhh........eeee.eeee..eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xo0 A  24 TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQR 278
                                    33        43        53        63        73        83        93       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270        
                                                                                                       101|                                                                                                                                                                         
                                                                                                        109                                                                                                                                                                         


Chain B from PDB  Type:DNA  Length:8
                                        
                 4xo0 B   1 CTTATxxT   8
                                 || 
                                 6-1WA
                                  7-1WA


Chain G from PDB  Type:DNA  Length:8
                                        
                 4xo0 G   9 AxxATAAG  16
                             ||     
                             ||     
                            10-1W5  
                             11-1W5
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XO0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XO0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XO0)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POL_MLVMS | P03355: 1d0e 1d1u 1i6j 1mml 1n4l 1nnd 1qai 1qaj 1ztt 1ztw 2fjv 2fjw 2fjx 2fvp 2fvq 2fvr 2fvs 2hb5 2m9u 2mqv 2ms0 2ms1 2r2r 2r2s 2r2t 2r2u 3fsi 3nnq 4m94 4m95 4mh8 4nzg 4xpc 4xpe 5dmq 5dmr

(-) Related Entries Specified in the PDB File

4xno 4xpc 4xpe