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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF MOLONEY MURINE LEUKEMIA VIRUS INTEGRASE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR3
 
Authors :  R. Guan, M. Jiang, H. Janjua, M. Maglaqui, L. Zhao, R. Xiao, T. B. Acton, J. K. Everett, M. Roth, G. T. Montelione, Northeast Structural Geno Consortium (Nesg)
Date :  12 Dec 13  (Deposition) - 05 Feb 14  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,C  (1x)
Biol. Unit 3:  B,D  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Retroviral Integrase, Zn Finger, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Guan, S. Aiyer, M. L. Cote, R. Xiao, M. Jiang, T. B. Acton, M. J. Roth, G. T. Montelione
X-Ray Crystal Structure Of The N-Terminal Region Of Moloney Murine Leukemia Virus Integrase And Its Implications For Viral Dna Recognition.
Proteins 2017
PubMed-ID: 28066922  |  Reference-DOI: 10.1002/PROT.25245

(-) Compounds

Molecule 1 - INTEGRASE P46
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneGAG-POL
    Organism CommonMOMLV
    Organism ScientificMOLONEY MURINE LEUKEMIA VIRUS
    Organism Taxid928306
    StrainISOLATE SHINNICK
    SynonymIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)ABCD
Biological Unit 2 (1x)A C 
Biological Unit 3 (1x) B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2DTT9Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
3ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2DTT9Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2DTT5Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2DTT4Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
3ZN-1Ligand/IonZINC ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:58 , HIS A:62 , CYS A:95 , CYS A:98BINDING SITE FOR RESIDUE ZN A 201
02AC2SOFTWAREPHE A:51BINDING SITE FOR RESIDUE ACT A 202
03AC3SOFTWARELEU A:57 , DTT C:202BINDING SITE FOR RESIDUE DTT A 203
04AC4SOFTWARELEU A:71 , DTT A:205BINDING SITE FOR RESIDUE DTT A 204
05AC5SOFTWARESER A:75 , DTT A:204 , LEU C:53BINDING SITE FOR RESIDUE DTT A 205
06AC6SOFTWAREHIS B:58 , HIS B:62 , CYS B:95 , CYS B:98BINDING SITE FOR RESIDUE ZN B 201
07AC7SOFTWARELEU B:71BINDING SITE FOR RESIDUE DTT B 203
08AC8SOFTWAREGLU B:52 , LEU B:53 , ARG D:74BINDING SITE FOR RESIDUE DTT B 204
09AC9SOFTWARETHR A:18 , LYS B:96 , GLN B:100 , GLU C:52BINDING SITE FOR RESIDUE DTT B 205
10BC1SOFTWAREHIS C:58 , HIS C:62 , CYS C:95 , CYS C:98BINDING SITE FOR RESIDUE ZN C 201
11BC2SOFTWARELEU A:53 , DTT A:203 , SER C:75 , HIS C:76BINDING SITE FOR RESIDUE DTT C 202
12BC3SOFTWARESER C:64 , SER C:66 , LYS C:67 , SER D:64 , SER D:66 , LYS D:67BINDING SITE FOR RESIDUE DTT C 203
13BC4SOFTWAREHIS D:58 , HIS D:62 , CYS D:95 , CYS D:98BINDING SITE FOR RESIDUE ZN D 201
14BC5SOFTWAREGLN A:100BINDING SITE FOR RESIDUE ACT D 202
15BC6SOFTWARELEU D:71BINDING SITE FOR RESIDUE DTT D 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NZG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NZG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NZG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NZG)

(-) Exons   (0, 0)

(no "Exon" information available for 4NZG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.eee....eeee..eeeehhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....ee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 4nzg A  12 HFHYTVTDIKDLTKLGAIYDKTKKYWVYQGKPVMPDQFTFELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQVNAS 104
                                    21        31        41        51        61        71        81        91       101   

Chain B from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.eee....eeee..eeeehhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....ee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 4nzg B  12 HFHYTVTDIKDLTKLGAIYDKTKKYWVYQGKPVMPDQFTFELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQVNAS 104
                                    21        31        41        51        61        71        81        91       101   

Chain C from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.eee....eeee..eeeehhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....ee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 4nzg C  12 HFHYTVTDIKDLTKLGAIYDKTKKYWVYQGKPVMPDQFTFELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQVNAS 104
                                    21        31        41        51        61        71        81        91       101   

Chain D from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.eee....eeee..eeeehhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....ee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 4nzg D  12 HFHYTVTDIKDLTKLGAIYDKTKKYWVYQGKPVMPDQFTFELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQVNAS 104
                                    21        31        41        51        61        71        81        91       101   

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NZG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NZG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NZG)

(-) Gene Ontology  (36, 36)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POL_MLVMS | P033551d0e 1d1u 1i6j 1mml 1n4l 1nnd 1qai 1qaj 1ztt 1ztw 2fjv 2fjw 2fjx 2fvp 2fvq 2fvr 2fvs 2hb5 2m9u 2mqv 2ms0 2ms1 2r2r 2r2s 2r2t 2r2u 3fsi 3nnq 4m94 4m95 4mh8 4xo0 4xpc 4xpe 5dmq 5dmr

(-) Related Entries Specified in the PDB File

3nnq DIFFERENT CONSTRUCT RELATED ID: NESG-OR3 RELATED DB: TARGETTRACK