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(-) Description

Title :  ANTHRAX TOXIN LETHAL FACTOR WITH HYDROXAMIC ACID INHIBITOR
 
Authors :  K. M. Maize, B. C. Finzel
Date :  04 Aug 15  (Deposition) - 11 Nov 15  (Release) - 25 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Anthrax Toxin, Lethal Factor, Metalloproteinase, Metalloprotease, Structural Dynamics, Ligand-Induced Conformational Change, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. K. Kurbanov, T. L. Chiu, J. Solberg, S. Francis, K. M. Maize, J. Fernandez, R. L. Johnson, J. E. Hawkinson, M. A. Walters, B. C. Finzel, E. A. Amin
Probing The S2' Subsite Of The Anthrax Toxin Lethal Factor Using Novel N-Alkylated Hydroxamates.
J. Med. Chem. V. 58 8723 2015
PubMed-ID: 26492514  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01446

(-) Compounds

Molecule 1 - LETHAL FACTOR
    Chains: A
    EC Number: 3.4.24.83
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG10
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 298-809
    Gene: LEF, PXO1-107, BXA0172, GBAA_PXO1_0172
    Mutation: YES
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Synonym: LF,ANTHRAX LETHAL TOXIN ENDOPEPTIDASE COMPONENT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
156P1Ligand/IonN~2~-(6-AMINOHEXYL)-N~2~-[(4-FLUORO-3-METHYLPHENYL)SULFONYL]-N-HYDROXY-D-ALANINAMIDE
2ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:655 , LYS A:656 , GLY A:657 , VAL A:675 , LEU A:677 , HIS A:686 , GLU A:687 , HIS A:690 , TYR A:728 , GLU A:735 , GLU A:739 , ZN A:802binding site for residue 56P A 801
2AC2SOFTWAREHIS A:686 , HIS A:690 , GLU A:735 , 56P A:801binding site for residue ZN A 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D1U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D1U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D1U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D1U)

(-) Exons   (0, 0)

(no "Exon" information available for 5D1U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:488
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhh.........hhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.............eeeeehhhhhhhhhhh...........hhhhhhhhh....eeee....eee...........eeeeee......eeee...eeee...eeeeeeeeeeee....eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.......eeee....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...hhhhh....eeeehhh.eeeee.........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d1u A 267 RYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDILSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISSNYMIVDINERPALDNERLKWRIQLSPDTRAGYLENGKLILQRNIGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSILLHGPSKGVELRNDSEGFIHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFFAEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIKFIINS 776
                                   276       286       296       306       316       326       336       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768        
                                                                                                        345|                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                                         368
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D1U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D1U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D1U)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEF_BACAN | P15917: 1j7n 1jky 1pwp 1pwq 1pwu 1pwv 1pww 1yqy 1zxv 2l0r 3kwv 4dv8 4pkq 4pkr 4pks 4pkt 4pku 4pkv 4pkw 4wf6 4xm6 4xm7 4xm8 5d1s 5d1t

(-) Related Entries Specified in the PDB File

1yqy THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
4pkq THE N-TERMINALLY TRUNCATED PROTEIN IN A P212121 SPACEGROUP
4pkr THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
4pks THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
4pkt THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
4pku THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
4pkv THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
4pkw THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH GM6001 IN A P212121 SPACEGROUP