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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE IN COMPLEX WITH (Z)-N-(2-BROMOPHENYL)-2-(HYDROXYIMINO)ACETAMIDE
 
Authors :  H. -L. Huang, J. C. Sacchettini
Date :  29 Jun 15  (Deposition) - 10 Aug 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A
Keywords :  Fragment, Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. L. Huang, I. V. Krieger, M. K. Parai, V. B. Gawandi, J. C. Sacchettini
Mycobacterium Tuberculosis Malate Synthase Structures With Fragments Reveal A Portal For Substrate/Product Exchange.
J. Biol. Chem. V. 291 27421 2016
PubMed-ID: 27738104  |  Reference-DOI: 10.1074/JBC.M116.750877
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MALATE SYNTHASE G
    Chains: A
    EC Number: 2.3.3.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: GLCB, RV1837C, MTCY1A11.06
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / H37RV)
    Organism Taxid: 83332
    Strain: ATCC 25618 / H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
14Z31Ligand/Ion(2E)-N-(2-BROMOPHENYL)-2-(HYDROXYIMINO)ACETAMIDE
2MG3Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:434 , ASP A:462 , 4Z3 A:804 , HOH A:975 , HOH A:1084 , HOH A:1230binding site for residue MG A 801
2AC2SOFTWAREVAL A:478 , ARG A:479 , THR A:482 , TRP A:589 , HOH A:1268binding site for residue MG A 802
3AC3SOFTWAREHIS A:235 , HOH A:918 , HOH A:1098 , HOH A:1470binding site for residue MG A 803
4AC4SOFTWAREVAL A:118 , ARG A:339 , MET A:432 , GLU A:434 , LEU A:461 , MET A:515 , TRP A:541 , MET A:631 , ASP A:633 , MG A:801 , HOH A:963 , HOH A:975 , HOH A:1084 , HOH A:1230 , HOH A:1272binding site for residue 4Z3 A 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C9W)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:683 -Pro A:684

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C9W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C9W)

(-) Exons   (0, 0)

(no "Exon" information available for 5C9W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:713
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.................hhhhhh....eeeee..hhhhhhhhhh..eeehhhhhhh................hhhhhhhhhhhhhhhhhhhh.....hhhhh.eeeee..eeeee....ee...hhh.eeeeeee..eeeeeeeee..eeeeeee.....hhhhh...eeeeeee...eeeee........hhhhhhhhhhhhhhhhh...........eeee.....eeee....eeeee......eeeeeee....eeehhhhhhhhhhhhhhhhhh.............eeeee....hhhhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......eeee.......hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee.....ee...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c9w A   2 TDRVSVGNLRIARVLYDFVNNEALPGTDIDPDSFWAGVDKVVADLTPQNQALLNARDELQAQIDKWHRRRVIPIDMDAYRQFLTEIGYLLPEPDDFTITTSGVDAEITTTAGPQLVVPVLNARFALNAANARWGSLYDALYGTDVIPETDGAEKGPTYNKVRGDKVIAYARKFLDDSVPLSSGSFGDATGFTVQDGQLVVALPDKSTGLANPGQFAGYTGAAESPTSVLLINHGLHIEILIDPESQVGTTDRAGVKDVILESAITTIMDFEDSVAAVDAADKVLGYRNWLGLNKGDLAARVLNRDRNYTAPGGGQFTLPGRSLMFVRNVGHLMTNDAIVDTDGSEVFEGIMDALFTGLIAIHGLKASDGPLINSRTGSIYIVKPKMHGPAEVAFTCELFSRVEDVLGLPQNTMKIGIMDEERRTTVNLKACIKAAADRVVFINTGFLDRTGDEIHTSMEAGPMVRKGTMKSQPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGLAGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGASKVPDIHDVALMEDRATLRISSQLLANWLRHGVITSADVRASLERMAPLVDRQNAGDVAYRPMAPNFDDSIAFLAAQELILSGAQQPNGYTEPILHRRRREFKARAAE 727
                                    11        21        31        41        51        61        71 ||     82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       312       322       332       342       352       362       372       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724   
                                                                                                  73|                                                                                                                                                                                                                               301|                                                                 380|                                                                                                                                                                                                                                                                                                                                                        
                                                                                                   75                                                                                                                                                                                                                                312                                                                  383
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C9W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C9W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C9W)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:683 - Pro A:684   [ RasMol ]  
 

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 Related Entries

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UniProtKB/Swiss-Prot
        MASZ_MYCTU | P9WK17: 1n8i 1n8w 2gq3 3s9i 3s9z 3sad 3saz 3sb0 5c7v 5c9r 5c9u 5c9x 5cah 5cak 5cbb 5cbi 5cbj 5cc3 5cc5 5cc6 5cc7 5ccz 5cew 5cjm 5cjn 5drc 5dri 5dx7 5e9x 5ecv 5h8m 5h8p 5h8u 5t8g

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