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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE IN APO FORM
 
Authors :  I. V. Krieger, H. -L. Huang, J. C. Sacchettini
Date :  23 Dec 15  (Deposition) - 26 Oct 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym./Biol. Unit :  A
Keywords :  Fragment, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. L. Huang, I. V. Krieger, M. K. Parai, V. B. Gawandi, J. C. Sacchettini
Mycobacterium Tuberculosis Malate Synthase Structures With Fragments Reveal A Portal For Substrate/Product Exchange.
J. Biol. Chem. V. 291 27421 2016
PubMed-ID: 27738104  |  Reference-DOI: 10.1074/JBC.M116.750877
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MALATE SYNTHASE G
    Chains: A
    EC Number: 2.3.3.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: GLCB, RV1837C, MTCY1A11.06
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / H37RV)
    Organism Taxid: 83332
    Other Details: REGIONS CONTAINING RESIDUES 1, 73-74, 302-310, 379- 381, 676, AND 728-741 ARE DISORDERED AND EXCLUDED FROM THE FINAL REFINED MODEL.
    Strain: ATCC 25618 / H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5H8P)

(-) Sites  (0, 0)

(no "Site" information available for 5H8P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H8P)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:683 -Pro A:684

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H8P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H8P)

(-) Exons   (0, 0)

(no "Exon" information available for 5H8P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:701
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.................hhhhhh..eeeeeee..hhhhhhhhhhh.eeehhhhhhhh.............hhhhhhhhhhhhhhhhhhhh.....hhhhh.eeee...eeeee..eeee..hhh.eeeeeee..eeeeeeeee..eeeeeee...hhhhhh....eeeeeee...eeeee........hhhhhhhhhhhhhhhhhh...........eeee.....eeee....eeeee......eeeeeee....eeehhhhhhhhhhhhhhhhhh...........eeeee....hhhhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhh......eeeeee.....hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.....eee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h8p A   3 DRVSVGNLRIARVLYDFVNNEALPGTDIDPDSFWAGVDKVVADLTPQNQALLNARDELQAQIDKWHRRRIDMDAYRQFLTEIGYLLPEPDDFTITTSGVDAEITTTAGPQLVVPVLNARFALNAANARWGSLYDALYGTDVIPEGAEKGPTYNKVRGDKVIAYARKFLDDSVPLSSGSFGDATGFTVQDQLVVALPDKSTGLANPGQFAGYTGAAESPTSVLLINHGLHIEILIDPESQVGTTDRAGVKDVILESAITTIMDFEDSVAAVDAADKVLGYRNWLGLNKGDLAALRVLNRDRNYTAPGGGQFTLPGRSLMFVRNVGHLMTNDAIVDTDGSEVFEGIMDALFTGLIAIHGLKASPLINSRTGSIYIVKPKMHGPAEVAFTCELFSRVEDVLGLPQNTMKIGIMDEERRTTVNLKACIKAAADRVVFINTGFLDRTGDEIHTSMEAGPMVRKGTMKSQPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGLAGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGCSKVPDIHDVALMEDRATLRISSQLLANWLRHGVITSADVRASLERMAPLVDRQNAGYRPMAPNFDDSIAFLAAQELILSGAQQPNGYTEPILHRRRREFKARAA 726
                                    12        22        32        42        52        62        76        86        96       106       116       126       136       146   ||  158       168       178       188       199       209       219       229       239       249       259       269       279       289       299 ||    318       328       338       348       358       368       378||     392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672  ||   685       695       705       715       725 
                                                                                               71|                                                                       150|                                         197|                                                                                                   301|                                                                 379|                                                                                                                                                                                                                                                                                                675|                                               
                                                                                                76                                                                        153                                          199                                                                                                    311                                                                  384                                                                                                                                                                                                                                                                                                 679
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H8P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H8P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H8P)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:683 - Pro A:684   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MASZ_MYCTU | P9WK17: 1n8i 1n8w 2gq3 3s9i 3s9z 3sad 3saz 3sb0 5c7v 5c9r 5c9u 5c9w 5c9x 5cah 5cak 5cbb 5cbi 5cbj 5cc3 5cc5 5cc6 5cc7 5ccz 5cew 5cjm 5cjn 5drc 5dri 5dx7 5e9x 5ecv 5h8m 5h8u 5t8g

(-) Related Entries Specified in the PDB File

5h8m 5h8u